Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058982 |
| length | 685 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 5 |
| gene id | XLOC_030167 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 30392148 ~ 30411165 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007224 | smoothened signaling pathway | biological_process |
| GO:0007228 | positive regulation of hh target transcription factor activity | biological_process |
| GO:0035082 | axoneme assembly | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030912-6 | Predicted to enable ATP binding activity and protein kinase activity. Acts upstream of or within several processes, including axoneme assembly; determination of left/right symmetry; and smoothened signaling pathway. Predicted to be active in cytoplasm. Is expressed in neural tube. Orthologous to human STK36 (serine/threonine kinase 36). |
| ensembl_id | ENSDART00000139065 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061719 | lncRNA | upstream | 403988 | 29902153 ~ 29988431 (+) | False | XLOC_030159 |
| TCONS_00061718 | lncRNA | upstream | 403988 | 29902153 ~ 29988431 (+) | False | XLOC_030159 |
| TCONS_00061717 | lncRNA | upstream | 439503 | 29902153 ~ 29952916 (+) | False | XLOC_030159 |
| TCONS_00061716 | lncRNA | upstream | 439503 | 29902153 ~ 29952916 (+) | False | XLOC_030159 |
| TCONS_00061720 | lncRNA | upstream | 439503 | 29927543 ~ 29952916 (+) | False | XLOC_030159 |
| TCONS_00061722 | lncRNA | downstream | 314028 | 30723268 ~ 30724619 (+) | False | XLOC_030174 |
| TCONS_00059000 | lncRNA | downstream | 314743 | 30723983 ~ 30727648 (+) | True | XLOC_030174 |
| TCONS_00061723 | lncRNA | downstream | 371190 | 30780430 ~ 30916825 (+) | False | XLOC_030177 |
| TCONS_00061724 | lncRNA | downstream | 371190 | 30780430 ~ 30921998 (+) | False | XLOC_030177 |
| TCONS_00061725 | lncRNA | downstream | 371190 | 30780430 ~ 30974079 (+) | False | XLOC_030177 |
| TCONS_00058980 | mRNA | upstream | 599 | 30384554 ~ 30391820 (+) | True | XLOC_030166 |
| TCONS_00058979 | mRNA | upstream | 183351 | 30179010 ~ 30209068 (+) | True | XLOC_030165 |
| TCONS_00058977 | mRNA | upstream | 301913 | 30089715 ~ 30090506 (+) | True | XLOC_030163 |
| TCONS_00058973 | mRNA | upstream | 495651 | 29851433 ~ 29896768 (+) | True | XLOC_030158 |
| TCONS_00058971 | mRNA | upstream | 543647 | 29831235 ~ 29848772 (+) | False | XLOC_030157 |
| TCONS_00058983 | mRNA | downstream | 108796 | 30518036 ~ 30533557 (+) | False | XLOC_030168 |
| TCONS_00058984 | mRNA | downstream | 109201 | 30518441 ~ 30529072 (+) | False | XLOC_030168 |
| TCONS_00058985 | mRNA | downstream | 111009 | 30520249 ~ 30534426 (+) | True | XLOC_030168 |
| TCONS_00058986 | mRNA | downstream | 179616 | 30588856 ~ 30595372 (+) | True | XLOC_030169 |
| TCONS_00058987 | mRNA | downstream | 187237 | 30596477 ~ 30606645 (+) | False | XLOC_030170 |
| TCONS_00058978 | other | upstream | 225847 | 30166456 ~ 30166572 (+) | True | XLOC_030164 |
| TCONS_00058976 | other | upstream | 393572 | 29998762 ~ 29998847 (+) | True | XLOC_030162 |
| TCONS_00058975 | other | upstream | 401875 | 29990452 ~ 29990544 (+) | True | XLOC_030161 |
| TCONS_00058974 | other | upstream | 402198 | 29990147 ~ 29990221 (+) | True | XLOC_030160 |
| TCONS_00058970 | other | upstream | 544520 | 29831195 ~ 29847899 (+) | False | XLOC_030157 |
| TCONS_00058990 | other | downstream | 198598 | 30607838 ~ 30608538 (+) | False | XLOC_030170 |
| TCONS_00058994 | other | downstream | 259881 | 30669121 ~ 30670269 (+) | True | XLOC_030171 |
| TCONS_00058998 | other | downstream | 313889 | 30723129 ~ 30727648 (+) | False | XLOC_030174 |
| TCONS_00058999 | other | downstream | 314670 | 30723910 ~ 30726617 (+) | False | XLOC_030174 |
| TCONS_00059004 | other | downstream | 334606 | 30743846 ~ 30749041 (+) | True | XLOC_030175 |
