RNA id: TCONS_00061722



Basic Information


Item Value
RNA id TCONS_00061722
length 1352
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id XLOC_030174
representative False

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30723129 ~ 30727648 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAGTGTGTTTTTAACAATTTTCATAAGAAATAACACACTTAGTTTACTTAGTATAATATACAcgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacgtgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACTCCTGACCTGTGCTCGCCTCACGCCCGACATGTTGCTCCACCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaataccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactattgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGACTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00061719 lncRNA upstream 734837 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA upstream 734837 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061717 lncRNA upstream 770352 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061716 lncRNA upstream 770352 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061720 lncRNA upstream 770352 29927543 ~ 29952916 (+) False XLOC_030159
TCONS_00061723 lncRNA downstream 55811 30780430 ~ 30916825 (+) False XLOC_030177
TCONS_00061724 lncRNA downstream 55811 30780430 ~ 30921998 (+) False XLOC_030177
TCONS_00061725 lncRNA downstream 55811 30780430 ~ 30974079 (+) False XLOC_030177
TCONS_00061726 lncRNA downstream 55945 30780564 ~ 30828980 (+) False XLOC_030177
TCONS_00061727 lncRNA downstream 55968 30780587 ~ 30814570 (+) False XLOC_030177
TCONS_00058997 mRNA upstream 21377 30699260 ~ 30701891 (+) True XLOC_030173
TCONS_00058995 mRNA upstream 25360 30680804 ~ 30697908 (+) False XLOC_030172
TCONS_00058996 mRNA upstream 29008 30682737 ~ 30694260 (+) True XLOC_030172
TCONS_00058992 mRNA upstream 50786 30624183 ~ 30672482 (+) False XLOC_030171
TCONS_00058993 mRNA upstream 50786 30635309 ~ 30672482 (+) False XLOC_030171
TCONS_00059001 mRNA downstream 17111 30741730 ~ 30749493 (+) False XLOC_030175
TCONS_00059003 mRNA downstream 17169 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00059002 mRNA downstream 17169 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00059005 mRNA downstream 34613 30759232 ~ 30770807 (+) True XLOC_030176
TCONS_00059007 mRNA downstream 261893 30986512 ~ 30995108 (+) True XLOC_030179
TCONS_00058994 other upstream 52999 30669121 ~ 30670269 (+) True XLOC_030171
TCONS_00058990 other upstream 114730 30607838 ~ 30608538 (+) False XLOC_030170
TCONS_00058982 other upstream 314028 30392419 ~ 30409240 (+) True XLOC_030167
TCONS_00058978 other upstream 556696 30166456 ~ 30166572 (+) True XLOC_030164
TCONS_00058976 other upstream 724421 29998762 ~ 29998847 (+) True XLOC_030162
TCONS_00059004 other downstream 19227 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00059006 other downstream 55981 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059020 other downstream 823693 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059030 other downstream 1135452 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059033 other downstream 1219988 31944607 ~ 31944722 (+) False XLOC_030193

Expression Profile


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