XLOC_030163 (timm8b)


Basic Information

Item Value
gene id XLOC_030163
gene name timm8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30089715 ~ 30090506 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058977
GTCATATTCTTGCGGCGGAAGTACTAGCTTGTCACACTGTCCATGCTTGTCATTGAGCACGGTGGATTTAATCCGTATATGATCTTGTGTATATAATCTGTCGGTAAAGTGTTGAAATGGCGGATTTTCACTCCAGCTTTGACTTGCCATCGGCTGGTTCCTCGGAGAAGGCAGAGGCCGCGGAGCTGCAGCGTATGCTCGCGGTGGAGCAGCAGAAGGCTCAGTTTCAGGCGCAGGTTCACAATTTTACGGATGTATGCTGGGACAAGTGCGTGGACAAACCGAGCTCCAAACTGGATTCCCGGACTGAGACCTGTCTGGTGAGCTGCGTGGAGCGCTTCATCGACACCACACTGACCATCACCAACCGATTCACGCAGATGGTCCAGAAGGGCACGCACTGACCGCAGGACAGCGGCCTCAAGGACAGCCCTGTTCTCAGTGTACGTCCTTTAATGTGTCCGATAAATCTTTTATTCACTTGGATAAACATCTCACAAGCCAATAGACTCTGAAAGAGTTACGTTATGCGCACAGCTGACTTCTTTATACAGGCAACAACAAAAACTGTCATTTTTGCTTGAACACCTGTCGTCCACTTCAGTgaaactaattgttttatttgactttatataaatcatatttcaattaaataaatacaatcttCAGCATTGCAGAAGAACAAAC

Function

symbol description
timm8b Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Orthologous to human TIMM8B (translocase of inner mitochondrial membrane 8 homolog B).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0072321 chaperone-mediated protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031019-1 Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Orthologous to human TIMM8B (translocase of inner mitochondrial membrane 8 homolog B).

Ensembl:

ensembl_id ENSDARG00000055708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058977 True 687 mRNA 0.46 2 30089715 30090506

Neighbor

gene id symbol gene type direction distance location
XLOC_030162 dre-mir-125b-2 coding upstream 90868 29998762 ~ 29998847 (+)
XLOC_030161 dre-let-7a-4 coding upstream 99171 29990452 ~ 29990544 (+)
XLOC_030160 mir100-2 coding upstream 99494 29990147 ~ 29990221 (+)
XLOC_030159 NA coding upstream 101284 29902153 ~ 29988431 (+)
XLOC_030158 ubash3ba coding upstream 192947 29851433 ~ 29896768 (+)
XLOC_030164 BX897688.1 coding downstream 75950 30166456 ~ 30166572 (+)
XLOC_030165 adamts15a coding downstream 88504 30179010 ~ 30209068 (+)
XLOC_030166 zgc:158412 coding downstream 294048 30384554 ~ 30391820 (+)
XLOC_030167 stk36 coding downstream 301642 30392148 ~ 30411165 (+)
XLOC_030168 hmbsa coding downstream 427530 30518036 ~ 30534426 (+)
XLOC_030153 NA non-coding upstream 297091 29784172 ~ 29792624 (+)
XLOC_030174 BX276103.2 non-coding downstream 632623 30723129 ~ 30727648 (+)
XLOC_030177 NA non-coding downstream 689924 30780430 ~ 30974079 (+)
XLOC_030178 NA non-coding downstream 861717 30952223 ~ 30954521 (+)
XLOC_030185 CR759893.1 non-coding downstream 1457806 31548312 ~ 31548787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004531 timm8b,LOC107598437,LOC107717885 coding CM030121.1 CM030121.1 52912010 ~ 52912584 (+)