RNA id: TCONS_00059067


Basic Information

Item Value
RNA id TCONS_00059067
length 2632
RNA type mRNA
GC content 0.48
exon number 26
gene id XLOC_030210
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32815745 ~ 32859700 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAAAATTAGAGACGTCATTCCTGATTATCACGATGGGGATTTTCTGTGCCCTAAAAGTGGGGCAAAGCTGGCCTCTCTCTTTGGTCTGGACCGAGCAGAGTGTCAGGGAAATGAGTCCTTCCAATTCACCGCCCCCAAACAACCAAAAAGGACAAGCGGTGTATTAGggcTGCCTCCTAAgaaacctcctcctcctcctccatgtGCTCCAGCTGTGCTGTTTGCTACAGCTGCTCATGCATTCTGCTTTGTAAATGGGCAATATGTGAAGCAAGGCAAGATAGGAGCTGCTGTTTTAGGGAATCATGTCACCAAAGAGTACAAGATTCTGTTGTACGGCAATAAACAAAAGCAGATCACaacggctcgaatccagcgtggATTTGTGCTCACGGTTCAGCCCTGTGAATACGTCGCTTTCTATGATGACCAGCAGCAGAACTGGTCTTTAATGTTTGACTTAGAAAAGGCCAGACCGGAGTTCATAAGGGAGGTGTTTTTGGCCAGGTGGAACAGCGAGGCTTCTTCAGACTCTCTTCTCACCCAGGATCTGCTCCATGGAGAAGGTCAAGCTGTAAATGTAGGAGACACTGTGGAGGTGGCATATTCTGCATGGCTCTTACACAACCACTCTCTAGGACAGATATTTGACTCAAATCTGGGCAAAGAAAAGCTCCAGCGTGTGAAGCTTGGTTCAGGGAAAGCTCTGAGGGGATTGGAAGACGGGGTGCTTGGTATGCAGAAAGGGGGTCGACGGCTGCTAATCATCCCTCCTAGTATGAGTTACGGGTCAAAGAGCGGCCCTAACCATGTTCCGGCAGAAAGCACTCTGGTCTATGATGTAGAAATTCATCGAgTTAAATTCTGCAAAAACAGACATGGTGGGGGATCTGCTGAACCCTCCCGCACACCTCCGGACATCTGTTCAGACACTCTGAGTGAAGGAAAGCTGGACACACCGGAGACAGACAAGTCAAAGTGTGCGCAGCATGACCTAGACCAAGCTCCTGATGGAAAGGTGGAACCTAAAAGTGAATGCCAGATTGATTCTGGTCCATCTAAAGCCAAACTGATCTCTCGTATAGCCAAGATGGGTCAACCTATGCTTCCATTTCTGATTGGGGCAATTCCAGCTCAGCCCGACCCCAGCGACTCCGAAACAGAGGACGCCAGTGAGTCTGGACTGACCTGCGACCCCTGTCCTTCACATGATTCACCCTCCCCAAAACCTGCTCAAATTCCCTGCACTTCTCCACCTTCGTTGTATCAGGCTGATGCTGTTCAGAATAAGGAAGCAGCACCACAAGCAGAATCAAACCCTGCTCAAGACTTTCAGCCATGTTCCTGTAGAGAAAATCCGTATTTTCCACCACAGCTGAATTCTTTTACTTCAATTTACCAAGCCCAGCACATTCCATACTCAACACCTGATATTACATCCTTCCTGATGTCTGACGCTCGCCAGCATAACAAAGAAATCCTGATGGCTATTGAGAAGCTGGAACATAGGGTGGACCGACTGACCAGCAAGGTGGATGATTTACATAAAGAGGGTCACTTCTCTTTCGGACTCGCCACTGTGTCTTTAGAAACAAACATGATCCTGTACAACATCCAGAGAATTATTCAGGAGAGCGTGTGCCTGAAAAATGAGGTTTTGAGCTCTAAACTGGAGGGACAGAACCACAAAATGGAGGATCTGTGTGAACAGAACAAGAGGTATATGGAGCAGCTGCCAATCCAGACCTGCCACATTCATTCTGAGCAGGAAAAGgagGATTCGTTGATTTCCTCCTGTCAGTTGCAGCAGCAGTTGGTGAATCTCCAGCAGAGGGAGACAGAGATTCAGACTCAACTCAGTGCTGCTCTCGATGACAAACACAAGCACTGTGCTCAGATCAGCCTTCTGGAGGCACAAGTGGCAGAACTTTTGAAAAAAGAAGAACAGAGCGATCAGCGGTGGAGGGCAGAGAAGCAGAAGTACAAAGAGTTGGAATCCACTATACAAAACATGGATGAGGAGATGCAAGACCTGAGGGCTGAAAAGGAGAATCTGCAACAGGTCCTGTCAGAGAAAAAGAGGAAGTGGAAGGCTGAGCGGGAGCGCATTATTGTGGAGCAGGAGGAGGAACATGAGAGGAGTCAGCAGGAGGTCCTACAGCTCCTCATGCAGCTCAGAAAGGCCAGACACTCCACTGAAGCACTTatgaagcagGCTGAGTTTGAGTTGAGCGCTCAAAAGAAATGTGATGCTGAACTGGCAGAGCAAGAGAAGCTGGAAGGAGCCATAACTGAGCTGCAAGAACAGtgtGAGGATCTAACAACAACGTCGTCAAGTATGAATGAGCAGTTTGACACTCAGTTGGCTGTTCAGGTAAAGCGAGCGATGAAAGAAGTGTTTCAGTGTCTCAGGACCGAGTTTGATCTGCAGGAGTCTTACAGAGGACATTCAGTTCTCCAGATTCTCCAAAACACCATCAAGGGCGTCACCATGAAATTCCTCTCAGAATCTTGGGAGTTTGAATCAGATGAAGATAAAGCAGAAGAAGAATATGGATCTACTGAAGAGGTGTTGATGCCGAAGGATAACGATGAAATAGAGGAGAAAGTAGAGCATTAAGCAGAAG

Function

GO:

id name namespace
GO:0019254 carnitine metabolic process, CoA-linked biological_process
GO:0005777 peroxisome cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004092 carnitine O-acetyltransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169358

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061733 lncRNA upstream 464080 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059058 lncRNA upstream 567501 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061732 lncRNA upstream 568341 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00061731 lncRNA upstream 744984 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00059039 lncRNA upstream 837007 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00059076 lncRNA downstream 23000 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059079 lncRNA downstream 23893 32883593 ~ 32886408 (+) False XLOC_030211
TCONS_00059086 lncRNA downstream 69134 32928834 ~ 32932768 (+) False XLOC_030215
TCONS_00059092 lncRNA downstream 421463 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00061734 lncRNA downstream 421463 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00059066 mRNA upstream 525 32817688 ~ 32831036 (+) False XLOC_030210
TCONS_00059064 mRNA upstream 38080 32791245 ~ 32793481 (+) True XLOC_030209
TCONS_00059061 mRNA upstream 332825 32490238 ~ 32498736 (+) False XLOC_030207
TCONS_00059062 mRNA upstream 333004 32490595 ~ 32498557 (+) True XLOC_030207
TCONS_00059059 mRNA upstream 476272 32345187 ~ 32355289 (+) False XLOC_030205
TCONS_00059075 mRNA downstream 22988 32882688 ~ 32887020 (+) False XLOC_030211
TCONS_00059078 mRNA downstream 23120 32882820 ~ 32886809 (+) False XLOC_030211
TCONS_00059083 mRNA downstream 54621 32914321 ~ 32920149 (+) True XLOC_030214
TCONS_00059084 mRNA downstream 64969 32924669 ~ 32946255 (+) False XLOC_030215
TCONS_00059087 mRNA downstream 72657 32932357 ~ 32962023 (+) True XLOC_030215
TCONS_00059063 other upstream 193796 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059060 other upstream 485430 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059050 other upstream 648833 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059033 other upstream 886839 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 962933 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059077 other downstream 23007 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059080 other downstream 25505 32885205 ~ 32885331 (+) True XLOC_030212
TCONS_00059081 other downstream 26060 32885760 ~ 32885886 (+) True XLOC_030211
TCONS_00059082 other downstream 26772 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059085 other downstream 65218 32924918 ~ 32932768 (+) False XLOC_030215

Expression Profile

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