Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060008 |
| length | 1816 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 15 |
| gene id | XLOC_030858 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 10055980 ~ 10082244 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042770 | signal transduction in response to DNA damage | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0044773 | mitotic DNA damage checkpoint | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko04110 | Cell cycle |
| ko04111 | Cell cycle - yeast |
| ko04115 | p53 signaling pathway |
| ko04218 | Cellular senescence |
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko01001 | Protein kinases |
| ko03400 | DNA repair and recombination proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-8942 | Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cellular response to DNA damage stimulus. Predicted to be active in cytoplasm and nucleus. Is expressed in eye; head; optic tectum; and proliferative region. Human ortholog(s) of this gene implicated in several diseases, including Li-Fraumeni syndrome 2; breast cancer (multiple); colorectal cancer; osteosarcoma; and prostate cancer. Orthologous to human CHEK2 (checkpoint kinase 2). |
| ensembl_id | ENSDART00000036421 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061520 | lncRNA | downstream | 173576 | 9880188 ~ 9882404 (-) | True | XLOC_030853 |
| TCONS_00061518 | lncRNA | downstream | 909203 | 9144367 ~ 9146777 (-) | False | XLOC_030844 |
| TCONS_00061519 | lncRNA | downstream | 909203 | 9144457 ~ 9146777 (-) | True | XLOC_030844 |
| TCONS_00061937 | lncRNA | downstream | 928421 | 9107085 ~ 9127559 (-) | True | XLOC_030843 |
| TCONS_00061517 | lncRNA | downstream | 1024229 | 9030240 ~ 9031751 (-) | True | XLOC_030840 |
| TCONS_00061938 | lncRNA | upstream | 133270 | 10215514 ~ 10217606 (-) | True | XLOC_030859 |
| TCONS_00060011 | lncRNA | upstream | 406693 | 10488937 ~ 10500684 (-) | False | XLOC_030861 |
| TCONS_00061521 | lncRNA | upstream | 406750 | 10488994 ~ 10495826 (-) | False | XLOC_030861 |
| TCONS_00061939 | lncRNA | upstream | 415227 | 10497471 ~ 10500797 (-) | False | XLOC_030861 |
| TCONS_00060012 | lncRNA | upstream | 416944 | 10499188 ~ 10500684 (-) | True | XLOC_030861 |
| TCONS_00060007 | mRNA | downstream | 43009 | 10011922 ~ 10012971 (-) | True | XLOC_030857 |
| TCONS_00060006 | mRNA | downstream | 48083 | 10003458 ~ 10007897 (-) | True | XLOC_030856 |
| TCONS_00060005 | mRNA | downstream | 53720 | 9983350 ~ 10002260 (-) | True | XLOC_030855 |
| TCONS_00060003 | mRNA | downstream | 107483 | 9894143 ~ 9948497 (-) | False | XLOC_030854 |
| TCONS_00060004 | mRNA | downstream | 124873 | 9896335 ~ 9931107 (-) | True | XLOC_030854 |
| TCONS_00060009 | mRNA | upstream | 149949 | 10232193 ~ 10239079 (-) | False | XLOC_030860 |
| TCONS_00060010 | mRNA | upstream | 150767 | 10233011 ~ 10236599 (-) | True | XLOC_030860 |
| TCONS_00060015 | mRNA | upstream | 683367 | 10765611 ~ 10946379 (-) | False | XLOC_030864 |
| TCONS_00060016 | mRNA | upstream | 684303 | 10766547 ~ 10768258 (-) | False | XLOC_030864 |
| TCONS_00060017 | mRNA | upstream | 863509 | 10945753 ~ 10946232 (-) | True | XLOC_030864 |
| TCONS_00059993 | other | downstream | 850089 | 9203723 ~ 9205891 (-) | False | XLOC_030847 |
| TCONS_00059992 | other | downstream | 869074 | 9179822 ~ 9186906 (-) | False | XLOC_030847 |
| TCONS_00059990 | other | downstream | 876544 | 9173538 ~ 9179436 (-) | True | XLOC_030846 |
| TCONS_00059989 | other | downstream | 885446 | 9166395 ~ 9170534 (-) | True | XLOC_030845 |
| TCONS_00059982 | other | downstream | 1332937 | 8722928 ~ 8723043 (-) | True | XLOC_030836 |
| TCONS_00060013 | other | upstream | 425582 | 10507826 ~ 10508814 (-) | True | XLOC_030862 |
| TCONS_00060014 | other | upstream | 638650 | 10720894 ~ 10724665 (-) | True | XLOC_030863 |
| TCONS_00060031 | other | upstream | 1900120 | 11982364 ~ 12031921 (-) | False | XLOC_030876 |
| TCONS_00060039 | other | upstream | 2110654 | 12192898 ~ 12193014 (-) | True | XLOC_030880 |
| TCONS_00060044 | other | upstream | 2271477 | 12353721 ~ 12372897 (-) | False | XLOC_030879 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000338_00714986_00727053.mRNA | True | 1528 | mRNA | 0.45 | 13 | CI01000338 | 714854 ~ 727053 (-) |
