RNA id: TCONS_00061519


Basic Information

Item Value
RNA id TCONS_00061519
length 776
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_030844
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 9144367 ~ 9146777 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgaCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGGTTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacactTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggattgaaccagcaaccttcttggctaaccactgtgctgccccatgTGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACACTCTtgctgtcttaatgcaccagacattttgttataaataatcatgtgcgtttcatgtttatttataaaactgctaatttatctcatagcacttcatttttgtcttgatatttaatatctcttgtttaaatacactatgaacagcagctgcgctaattattttccttgttccctatttccacctggggatatttatctagaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTAtcatgagcagatgctgtggtggtc

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061937 lncRNA downstream 16898 9107085 ~ 9127559 (-) True XLOC_030843
TCONS_00061517 lncRNA downstream 112706 9030240 ~ 9031751 (-) True XLOC_030840
TCONS_00059986 lncRNA downstream 180682 8959728 ~ 8963775 (-) True XLOC_030839
TCONS_00061516 lncRNA downstream 500274 8640678 ~ 8644183 (-) True XLOC_030832
TCONS_00061515 lncRNA downstream 505023 8637860 ~ 8639434 (-) True XLOC_030831
TCONS_00061520 lncRNA upstream 733411 9880188 ~ 9882404 (-) True XLOC_030853
TCONS_00061938 lncRNA upstream 1068737 10215514 ~ 10217606 (-) True XLOC_030859
TCONS_00060011 lncRNA upstream 1342160 10488937 ~ 10500684 (-) False XLOC_030861
TCONS_00061521 lncRNA upstream 1342217 10488994 ~ 10495826 (-) False XLOC_030861
TCONS_00061939 lncRNA upstream 1350694 10497471 ~ 10500797 (-) False XLOC_030861
TCONS_00059988 mRNA downstream 54279 9078198 ~ 9090178 (-) True XLOC_030842
TCONS_00059987 mRNA downstream 71024 9070382 ~ 9073433 (-) True XLOC_030841
TCONS_00059984 mRNA downstream 233754 8832299 ~ 8910703 (-) False XLOC_030838
TCONS_00059985 mRNA downstream 236638 8891244 ~ 8907819 (-) True XLOC_030838
TCONS_00059983 mRNA downstream 326616 8769069 ~ 8817841 (-) True XLOC_030837
TCONS_00059991 mRNA upstream 32801 9179578 ~ 9216758 (-) False XLOC_030847
TCONS_00059994 mRNA upstream 60284 9207061 ~ 9216758 (-) True XLOC_030847
TCONS_00059995 mRNA upstream 294421 9441198 ~ 9540641 (-) False XLOC_030848
TCONS_00059996 mRNA upstream 298362 9445139 ~ 9540770 (-) True XLOC_030848
TCONS_00059997 mRNA upstream 410166 9556943 ~ 9580837 (-) False XLOC_030849
TCONS_00059982 other downstream 421414 8722928 ~ 8723043 (-) True XLOC_030836
TCONS_00059979 other downstream 462086 8678463 ~ 8682371 (-) True XLOC_030833
TCONS_00059976 other downstream 509065 8635268 ~ 8635392 (-) True XLOC_030830
TCONS_00059969 other downstream 756279 8381704 ~ 8388178 (-) True XLOC_030825
TCONS_00059964 other downstream 1171578 7972759 ~ 7972879 (-) True XLOC_030821
TCONS_00059989 other upstream 19618 9166395 ~ 9170534 (-) True XLOC_030845
TCONS_00059990 other upstream 26761 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00059992 other upstream 33045 9179822 ~ 9186906 (-) False XLOC_030847
TCONS_00059993 other upstream 56946 9203723 ~ 9205891 (-) False XLOC_030847
TCONS_00060013 other upstream 1361049 10507826 ~ 10508814 (-) True XLOC_030862

Expression Profile

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