Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00059983 |
| length | 1739 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_030837 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 8769069 ~ 8817841 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0090263 | positive regulation of canonical Wnt signaling pathway | biological_process |
| GO:0010628 | positive regulation of gene expression | biological_process |
| GO:0010634 | positive regulation of epithelial cell migration | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0050918 | positive chemotaxis | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0031016 | pancreas development | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0060173 | limb development | biological_process |
| GO:0050679 | positive regulation of epithelial cell proliferation | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0071696 | ectodermal placode development | biological_process |
| GO:0061033 | secretion by lung epithelial cell involved in lung growth | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0001934 | positive regulation of protein phosphorylation | biological_process |
| GO:0030334 | regulation of cell migration | biological_process |
| GO:0042060 | wound healing | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005104 | fibroblast growth factor receptor binding | molecular_function |
| GO:0005111 | type 2 fibroblast growth factor receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| GO:0042056 | chemoattractant activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060828-1 | Predicted to enable chemoattractant activity; growth factor activity; and type 2 fibroblast growth factor receptor binding activity. Acts upstream of or within animal organ development and ectodermal placode development. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in digestive system; lateral line system; mesoderm; pronephros; and tail bud. Human ortholog(s) of this gene implicated in LADD syndrome and aplasia of lacrimal and salivary glands. Orthologous to human FGF10 (fibroblast growth factor 10). |
| ensembl_id | ENSDART00000170921 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061516 | lncRNA | downstream | 124886 | 8640678 ~ 8644183 (-) | True | XLOC_030832 |
| TCONS_00059977 | lncRNA | downstream | 129069 | 8637804 ~ 8640000 (-) | False | XLOC_030831 |
| TCONS_00061515 | lncRNA | downstream | 129635 | 8637860 ~ 8639434 (-) | True | XLOC_030831 |
| TCONS_00061936 | lncRNA | downstream | 352236 | 8409461 ~ 8416833 (-) | True | XLOC_030826 |
| TCONS_00061935 | lncRNA | downstream | 444054 | 8317718 ~ 8325015 (-) | True | XLOC_030824 |
| TCONS_00059986 | lncRNA | upstream | 141887 | 8959728 ~ 8963775 (-) | True | XLOC_030839 |
| TCONS_00061517 | lncRNA | upstream | 212399 | 9030240 ~ 9031751 (-) | True | XLOC_030840 |
| TCONS_00061937 | lncRNA | upstream | 289244 | 9107085 ~ 9127559 (-) | True | XLOC_030843 |
| TCONS_00061518 | lncRNA | upstream | 326526 | 9144367 ~ 9146777 (-) | False | XLOC_030844 |
| TCONS_00061519 | lncRNA | upstream | 326616 | 9144457 ~ 9146777 (-) | True | XLOC_030844 |
| TCONS_00059981 | mRNA | downstream | 3641 | 8712798 ~ 8765428 (-) | True | XLOC_030835 |
| TCONS_00059980 | mRNA | downstream | 57912 | 8684652 ~ 8711157 (-) | True | XLOC_030834 |
| TCONS_00059978 | mRNA | downstream | 86479 | 8661414 ~ 8682590 (-) | False | XLOC_030833 |
| TCONS_00059975 | mRNA | downstream | 132901 | 8616667 ~ 8636168 (-) | True | XLOC_030829 |
| TCONS_00059973 | mRNA | downstream | 154852 | 8533929 ~ 8614217 (-) | False | XLOC_030828 |
| TCONS_00059984 | mRNA | upstream | 14458 | 8832299 ~ 8910703 (-) | False | XLOC_030838 |
| TCONS_00059985 | mRNA | upstream | 73403 | 8891244 ~ 8907819 (-) | True | XLOC_030838 |
| TCONS_00059987 | mRNA | upstream | 252541 | 9070382 ~ 9073433 (-) | True | XLOC_030841 |
| TCONS_00059988 | mRNA | upstream | 260357 | 9078198 ~ 9090178 (-) | True | XLOC_030842 |
| TCONS_00059991 | mRNA | upstream | 361737 | 9179578 ~ 9216758 (-) | False | XLOC_030847 |
| TCONS_00059982 | other | downstream | 46026 | 8722928 ~ 8723043 (-) | True | XLOC_030836 |
| TCONS_00059979 | other | downstream | 86698 | 8678463 ~ 8682371 (-) | True | XLOC_030833 |
| TCONS_00059976 | other | downstream | 133677 | 8635268 ~ 8635392 (-) | True | XLOC_030830 |
| TCONS_00059969 | other | downstream | 380891 | 8381704 ~ 8388178 (-) | True | XLOC_030825 |
| TCONS_00059964 | other | downstream | 796190 | 7972759 ~ 7972879 (-) | True | XLOC_030821 |
| TCONS_00059989 | other | upstream | 348554 | 9166395 ~ 9170534 (-) | True | XLOC_030845 |
| TCONS_00059990 | other | upstream | 355697 | 9173538 ~ 9179436 (-) | True | XLOC_030846 |
| TCONS_00059992 | other | upstream | 361981 | 9179822 ~ 9186906 (-) | False | XLOC_030847 |
| TCONS_00059993 | other | upstream | 385882 | 9203723 ~ 9205891 (-) | False | XLOC_030847 |
| TCONS_00060013 | other | upstream | 1689985 | 10507826 ~ 10508814 (-) | True | XLOC_030862 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU550292 | True | 640 | lncRNA | 0.53 | 3 | CI01000338 | 162644 ~ 178895 (-) |
