RNA id: TCONS_00059973


Basic Information

Item Value
RNA id TCONS_00059973
length 9875
RNA type mRNA
GC content 0.42
exon number 38
gene id XLOC_030828
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8533929 ~ 8614217 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGTGATGATGAACGTCCCTGCCAACATGGCGGTCAGCATCCGCGGCCGTCCGACCCGGAGTGTACGGATGAGAGGTCGGAATGACAGCGGGGAGGAGAATGTACCGCTGGATCTTACGCGGGAACCCTCAGACAACATGCGTGAGATCCTACAAAACATTGCCAAATCTCACGGGGTTTCCAACATGAGGAAGCTCGGCCATCTCAACAACTTTGTTAAGcTCCTGAACAGTGTAAGTCATTGTGAAGAAAAGTTAGGATTTACACATGAGGAAATCATCATTTgtcTGCGTGTGGCGTTGCTGAACGAGGTGAAGGAGGTTCGGGCTGCGGGTTTGAGAGCACTGAGGTATCTGATCCGTGACAGCAGCATCCTCCAGAAAGTTCTTCAGCTGCAGGTGGATTACCTAATCTCTAGGTGTATTGACATTCAGCAGAGCAATGAGGTGGAGCGAACTCAAGCCCTCCGATTGGTCAGAAAGATGATAACGGTGAACGCGCAGCTCTTTCCCAGCTCCGTGACCAACTCTCTGATAGCGGTGGGCAGTGATGGGCTGCAGGAGAGAGATCGCATGGTTCGGGCCTGTATCGCCATCATCTGTGAACTTGCACTGAAGAACCCAGAGGTGGTGGCGCAGCGAGGAGGTCTGAGCACCATCCTGAAGAACGTGATCGACTGTCAGCTGAGCCGCATCAACGAGGCCCTGATCACCACCATCCTGCACCTGCTCAATCACCCTCATACGCGCCAGTTCATACGCGCTGATGTTGAGCTGGAGCAAATCCTTGCACCTTACACTGACTTTCACTATAGACACAATCCTGAAACCGCCGAGGCACAAATCAAGGAGGACAGAGAAGCTCGTTTTTTAGCCAGTAAAATGGCCATCGTGGCAGCGTTTCGCTCATGGTCAGGTATTATAAACCTGTGTAAATCCGGGAACTCAGGGGTCCAGTCTTTGATAGGCCTGCTCTGTATACCAAACATGGATGTCAGAAAAGCCTTATTAGAAGTTCTGTATGAGATCTTCAGATTGCCTGTCCCATTAGTGACTGGAGATTTTGAGGAAGCCTTGCACAGCGTGGATCCCAGCAGGTTTCAGGACAGCTGGAGACTCTCTGACGGGTTTGTTGCCGCAGAAGCCAAAGTCATATTGCCTCACAGAGCGCGATCCAGACCAGACCTCATGGACAATTATCTGGCTCTGCTGCTGTCTGCTTTTATCAACAGTGGACTTCTAGAGgGTCTGGTGGAGGTCGTGACCAGCAGTGATGGACAGATATCTGTGAGAGCCACCATACTGCTTGGAGAACTCTTGCACATGGCCAATACGATTCTTCCTCACTCTCACAGTCATCATCTGCACTGTTTGCCAACACTGATCAACATGGCTGCTTCCTTTGACATCTCTCAGGAGAAACGGCTGCGTGCCAGTGCAGCCGTGAACCACCTGAAGCGTTTCCATGAAAAGAAGCGCCGGGGCCCCAAACCTTACAGTCTTTACCTGCATCACATCCTGCACAGGACGTCCAGCTCCTCTCACAGGAGGGACCAGCAGCATCATCGGCCACACAAGGACATCTATATTATGAAGGACACTGAAGAGGCGCTGATGATGAACCTGAGGGACAGTCAGATCCTCAATCACAAGCAAAACCTGGACTGGAACTGGATTTTGATCATCACTATACTGAAGTGGCCAAACGTGAACCTCAAAAACATCAAGGACGAGCAGATGCACAAgTTTGTGAGGAGGTTGCTATATTTCTATAAGCCCAGCAGTAAGCTGTACTCTGCTCTGGAGTTGGATCACGCCAAAGCCAGACAGCTCACAGTCGCAGGCTGCCAGTTCAACCAGTTCCTCCTGGATTCAGAAGAGGACGGTCAGTCGTATTTGGAGGAGCTGGTGAAGGAtattgtccagtggctcacttCGTCTTCTGGGCTCAAACCAGAGCGCAGTCTCCATAGCAATGGCCTCCTCACCACCCTCAATCAGCACTACTTCCTGTTTCTGGGCACTCTTTCTGCACAGCCACACGGAGTCAAGATGCTGGAGAAGTGTGGTGTATTTCATCTGTTGAACTTGTGCTCGATGAAGAACCAGGATCATCTGCTGAAGCTCACGGTCTCCACTCTGGACTACAGCAGAGACGGACTCGCTCGAGTCATTCTGTCTAAGATCCTCACGGCGGCCACTGATAACTGCCGCTTGTACGCCACCAAACACCTGCGTGTGCTTCTGCGTGCCAATGTTGAGTTCTTCAGTAACTGGGGGATGGAGCTGCTGGTCACGCAGTTGCACGACCACAACAAAACCATCTCAATGGAGGCGCTCGACATTCTGGACGAGGCCTGCGAAGACAAGGCCAATCTGCACGCTCTGATCCACATGAAACCAGCTCTGTCTCATCTGGGGGATAAAGGCCTCCTGCTGCTGTTGAGATTTCTTTCCATCCCGAAAGGCTTCTCCTACCTCAACGAAAGAGGCTACGTCAGCAAACAGCTGGAGAAATGGCTCAAGgaGTATAATCTGAAATATGTGGACATGATTGAAGAGCAGCTGAATGAAGCTCTTACAACATATCGCAAACCTGTCGACGGAGACAACTACGTCAGGCGCAGCAACCAAAGGTTACAGAGGCCAAATGTGTTTCTCCCGGTGCATTTATACGGGCAGCTGGTCCATGATAAAACCGGCTGTCTGCTTCTGGAAGCTCAGGGGGTTATCCCAGACCTGAGCTACACAGTGCGATCTCCAGTGCTGGATAAATGGGAAGGTGTTAAACAGCTGAAAGCAGCGCTCTGGGCTCTGGGCAACATTGGCAGCTCAAACTGGGGTCTAAACCTCCTCCTGGAGGAAAACGTGATTCCTGATATTATTGCTCTGGCTCAGCACTGTGAGGTTTTATCTATACGTGGtacgtgtgtgtatgtgttaggtGTGATCAGCCGGACGCGGCAGGGCAGTGATGTGCTGAAGGCTTCAGGATGGGACTCCGTTCGTCATAGTCGCAGGCAGCAGTGGCCCGTGGTCCCCGATGAGGTGGAGGTTCCTCTGCCCAGTGAACTGTCCTCCGTCCCCAGCACTCTCAGCCTCAACTCTGAGTCCACCAGCTCACGACACAACAGCGAGAGCGAGAGCCAGCCCAGTTTATACTTTATGGATGATGATCGTGAGGGTTTGGACATCTACGAGGACTCCTCCCTCAGCATGCACGCCAAAACCTCCAAAGAGCGCAGCCCGTTCACCATCCTGACCCCTTCGCACCTCCGAAACCGCTTTCTCAACTCACTATCCCTCCCTAGTAAGAAAGGCCGGAGCCCGACGGACACAAAAGGCACCAGTTTCACTGCAAAAACCCCAGATGAGCTCCGGCTCATGCACTGCAACCGGAGCATCGCTGAAGTCGCAAACTCTTCTCCAGGACACTCTGAAGTCTTTTACAACGGTAGCCGAATGCCCCGCAGCCCCACAGTCAGCCTAGAGACGTCATTCGTTGGTATTAAAGCACTAGCAGAGCCGTACGCGACAGATTCTGAATCCAGGAATCAATTTAAAAGAGAACGAAACAGCAGGGAGCGTTTAACCTGCGACGGTGCATCTGTCCTACCCGGCGGCGGGACTTTTAAAAGCCGCAGTCAGAGTTTTAACACGGACACCACCACTAGCGGGATCAGCTCCATGAGCTCCTCGCCATCCCGAGAGCCTGCGATGGATACAGACTGCGCTAGTCTGAACACTGTGGTTAGCGCTAGGACGGTCAAAATGCAGCATTCGCTCAGTCCTAATAATCATATTCTTCTCTCTAAGTCGAATTCCACATCGCTGGTTCCTCCTGGATCGGCGCACACGCTGCCGCGGCGAGCGCAGTCACTGAAATCGCCCTCAGTGGCTACTATTAAGAGCCTGGTGGACTGTAGTTACATGTACACGAGTCCACGGGACGCGCTGGGATACGCTACGCTGAAGCGGCTGCAGCAGCAGAGGATTCACCCATCCCTGTCCCACAGCGAAGCGCTGGCTTCTCCTGCTAAAGACGTGCTGTTTACTGACACCATCACCATGAAGACACGCAGCCTTGACTCACGGCTCACTCCACGCAGGTTTTTGAAAGCTCTGAGTTTTGCGTCTCTGGATAAAGAGGACTTGTTGAGTCCCATCAATCACTCCACTCTGCAGCGCTCCTCTTCCCTGCGCTCCATGGTCTCTAGCGCCACCTTCGGCTGCAGTGAGGACTACATCGGTCTGGCACTGCCCTTGGACATCAACAATATGTTTCAGattaaagaaACGTCATATTTCCAGAAGAGAACGAGTCCTCCAGCTGGAGATAAATCATCAAAATTTAATTTTGGGGAATCAGATGGTTTTCTGGAATCGTGTCGTGGCCCTCCACTGAAGCAGCAGGTGAGCATCACAGAGCTGCTAAACAGCAGCCGGTCAGAGCAGCACCACCTGCTGGGGGCAGAGGAGACCACAGGCTTACAGGAACACACAGAGCAGAACTGCCTTTACTGCAGCGCGATCAACGCCCTcggctctcacacacacagccacCTGAACAACACGCACAATCACAATGATCTGTCTGATGGTTTCTCTCAGTGGCACAGTCAGCCATCCCATAATCACCTGGAGGTGGTCACTCAGTccaagttctccggggtgtcggGCTGCAGTGACGCGGCCGTCAGTCAGGGCTCCGCCTGCAGCACTCCCAGCACTGAAATCATCCTGGGAGGAAAGGCCATATCTGAGGACGGGCCGGCCTGTCGAGTTCTGCTGAGAAAAGAGGTTTTGCGGCTCGTCATCAACCTCAGCTCTTCAGTTGGTACCAAAGGACATGAAACCGGCCTGCTGACGATAAAGGAGAAGTTTCCGTACGCGTTTGATGACATCTGCCTGTACTCCGAGGTTTCCTTCCTGCTGGCTTCCTGCACCTTTCGTCTGGCCTCACGCCGCTTCATCCAAGAGCTCTTCCAGGATGTGCAGTTCATTCCGCTATATGATGAAGCCGAAGCGGTGTTGACTAAACCATCAGTGGAGGACGCAGAGTCTTGATGCCTCCCTCAGCTTCCTGAACACTTCACTgcctccatcatcatcatcatcatcatcatcatcatcctcatcttctcCCGTTCAACACAGAGACACATGAATAAGTGGAGATAGAGGACAGATGGAGGAGAGGAAGTAAACGCTTGCAGGAAAACTTCAGATGGAGCAGTTTACCAAATAAGGTCATCAGACTGTGAAACAGGTGAACTTCAGACGGTCTGATCTGAGCGTGCACAACAAACAAACTATTTCACGAGAGAGGAAAAATGAAATGCTGTTTACACTTTAAGATTTCCAGATGCACAGATTAGCTGAACACTTCTctgcactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtacaAAATTCCCAATATTTTACAAACATTAACACTACAAACAGATGTGCCACTGCAAATGATTTCACTATGAAATGTAGGACTTCCTGAAGTTTGAACGGGCAAAACAATCGTGGATGGCATTTgtgctatttatttgtttttgtatgcgtggttgaattaatttttttgtgacCTCCAGACAATCAGATTTCTGTGTTTGGGGGGACATGCAAACATTAGCATCTATTGCTGGAAATGTATTAAAACACACAATCGAGCACTGATACACATATCACTGAGCTTCTTTGATTGGTAATAGTGTGGATTTTTTTACAAATGCTAGGGTGAATCTGATGAATTAGCATAATATCAAGTATAGGTCACTTTATTATTACAATGAAGCCAAATTCTCTTTGATTATCATCATGTTTTTATCATCAGATTttgaaattaaagggatagttcacccaaaaatgaagatttacgcactatttactctccctcaaatatttatgggtttctttcctctgttactAAAGACGATATGTTGAATAAAACCGATAACCACTGACTTTTATAAGAGGAAGAACAAATacaggttacaggtttccaacattcttcaaagtatcttttttgtcttcaacagaataaagaaactcaagcagaacaagtaaatgatgagagaatgttcagttttgtgtgaactgtctctttaaatgggACCTGGATGCACGAAACTTAGGACAAACAGTGGTTGGTATATCTCTGTGTAAAAAGTTTACAGATGTAGAAATTAGATGTATAAACTATACTCATTCGTCCATGTGATCTGATCTGATGACGGGACATTGATGATGAGTTTTGCAGGAAATTAAAGCGGATAAACATAATCATGCATGGGTTAGTTTTATTGACACGTTTACTAAAAGGGATCATCAAGAACCTTTGATGGAATATTCTCAGTTTAATATTGTGCTGCTCACCAAATCTTTGGCTTGATGTTGATTACAACAGAAAAAGATTTAATTTTTCAATACAATTTTTCAATACaagtaaatatttcatttttaggaCAATTATAGTAATTTCAAGCTAATTtccaatacactgtaaaaagcaattagttactgTACTTAAAATATGCAGTGAGTAAACCTACTACCTTAAAAGTGAAGTTGGCTTTACTTAAAGGTaataaacccattgtaacttggaaatgttaagttgacttaatttaacTTTTGGATTAATGTCAAAaattattcatcttttttttacccattttccCTTTATTATCAAATTAAAGTCAActtgtcattttaaaaacatcaggtttactcactttttcaatGTAAAATCAACTAACTACTTAAAAACATTAGGTTTACTCACAGTTTCAAAGTAAAATCAATTAATTGCATTAAAAACACCAGATGCACCAATTTTGTTTCtaaattaaagtcaactaatcgctttaaaacatCCGATTTACCCACtgttttaatgtaaaatcaactaatcaGTTTTAAAAACATCACATTTATTCACTGTTTCaaagtgaagtcaactaatcgctttaaaaacccAGATTTACCAATTTTGTTTCTAAAgttaactaattgctttaaaacatCCGATTTACCCACTGTTTTGAAGTAAAGTCTAATAATCAGTTTtaaaaacatcacaattttctcactgtttcaaagtaaagtcaactaatcgctttaaaaacatcCGATTTAATCACTTtttcaatgttaagtcaattaataacttttaaaaacatcagatttatttaatttttccaaagtagtcaactaatcacttttaaaacaTCAGATTTACCCATATTTTGAAAGtcaattaaaaacttttttaaaaacatcagatTTACTCACTggtttaaagtaaagtcaaaaaATCTCTTTGAAAAAGTGAGTACACctgatgtttttaatgtaaagtcaactgataacttttattcattttttcccaaagtaaagtcaactaattacgTTAAAAACGTCAGGTTTACTCAAATTTTcaaattaaagtcaactaattacttTAAAATCATGGTTTATTCATAGTTTCtaaattaaagtcaactaatcacacTAAAAACCCCAGATTTACTAATTTTGTTTCaaaattaaagtcaactaatcacattAAATCATCAGATTTAccctttttttcaaattaaagtcaaataatcacttttaaaaacatcacAATTATTCACTGTTTCAAAGTAAAATCAAGTAATCGCTTTTAAAATATCAGGTTTACTCACTATTACTATGTGAAGTCaactaataacttttaaaaacatcagatttacttaatttttcccaattaaattcaaataatttctttaaaaacatcaGATTTATCCATATTTTGAAAGTAAAGTCAGCTAATAACTTTTGAAAACATAaggtttactcactgtttaaaAGTCAGCTAATTGCTTAAAAACATCAGATTCACAGTTTTAAAGTAATGTCAACTAATTCCTTTAAAAACATCACATTTACTCACCGATTTAAAGTGAAGTCaaataatcgctttaaaaacatcAGATATATCCACGTTTTCcaaattaaagtcaactaattgctttaaaacatcagatttactcacttttttaaagtaaagtaaaactaatcgctttaaaacatcagatttattcacttttttaaagtaaagtaaaactaatcgctttaaaagcatcagatttactcactttttaaagtaaagtaaaactaatcgctttaaaacatcagatttactcacttttttaaagtaaagtaaaactaatcgctttaaaacatcagatttactcactttttaaagtaaaactaatcgctttaaaagcatcagATTTAccaatttttttccaaattaaagtcaactaatcgctttaaaacatcagatttactcacttttttaaaataaagtaaaactaatcgctttaaaacatcagatttactcacttttttaaagtaaagtaaaactaatcgctttaaaacatcagatttactcacttttttaaagtaaagtaaaactaatcgctttaaaacatcagatttattcactttttttaaaataaagtaaaactaatcgctttaaaagcatcagATTTAccaatttttttccaaattaaagtcaactaattgctttaaaaagtcaattaatgattgtaaagcaaaaaagaaaaatgatccCTCACAGTATTATTAATTTTTGCAGAGCAATGAAAATTATTTGAGATTAACAAGAATTACAAAAGGATTTAATACTTTCGGGAATAAAAATGAGATTATTGTAGTGACAATATTATTACAATGTGAATATTAATATACATAGTTATTACTGAAGACAGACTTAATTGCCTTGATTTAAAATAGatcatttttgtttatgtatttttgttttatccaAAATCGCATAGTTTTCATGATgtgtaaaaaatctgtttttacagACTTTAAAAGGAATTCAGTTTCTTTCAGGAagcaaaatgtgcttaaaaataaatcaataaataaataaataagtgtgcaaaaaaagtaataataacgTGCACCACTTAAATAACAGTCTTAATTTCTTAATGCATAATACTGTATACTTAATgatttctgttgtaaccaatgacATGTTCCTCTTGGTGATATATATCTAATGTTGAACCTGAAGTGTTTCTTTTAAGCTGCCAAAGCACTTTGTAGTGTTTCCCTTCACCTTTTTAAATCCATTAATTCCCAGTGTGTTCCTTAACCATGCACCTGCTTTATCAAGCCAAACCCGCACTGAAACATTTCACATGAAAACACTGGCACAGATCGTCTCAAATATCACTATCATGGAGTCTGGTAGTAAAGCCGCAGTTTTtacatgtgtgtttttgtattgATGTTCTGGACGTGTTCCTGATGTTCACACGAAGCACTGATCCGTCTCTCCTGTTCTCCCAAGATGATGTTTTAGATTTGCATGATGAATCGACACAGATTCAGTTTTGTATTTATTAACTGCaggatgtttttttgttgttgtttattgatTGGCTGAAGAGAAAACGTGCCGCGGCTTTGACTTGCGCCTGTGCTGCGGATCTGTACAAAATAGggtaaaagaaatgaaaaaaatatatatttatatttttcctaAACGATGACGTTGCAAGAGACGGTGTAATTTAAAaacgttgtttttgttttgttttgcccgATTCGTGTTTTCCCTTGTAAAGTGTGTACAGTGTGTTTTTGGGCACTTTCAGCTCTGGAAAAAAATCTTACAGTCTTATCAAAgggataaatatatattattaaagaagAAAACTCATGCTG

Function

GO:

id name namespace
GO:0030950 establishment or maintenance of actin cytoskeleton polarity biological_process
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0031929 TOR signaling biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:0031932 TORC2 complex cellular_component
GO:0008047 enzyme activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-49 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in TORC2 signaling and positive regulation of protein kinase B signaling. Predicted to act upstream of or within TOR signaling. Predicted to be part of TORC2 complex. Orthologous to human RICTOR (RPTOR independent companion of MTOR complex 2).

Ensembl:

ensembl_id ENSDART00000164844

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061936 lncRNA downstream 117096 8409461 ~ 8416833 (-) True XLOC_030826
TCONS_00061935 lncRNA downstream 208914 8317718 ~ 8325015 (-) True XLOC_030824
TCONS_00061514 lncRNA downstream 437903 8093285 ~ 8096026 (-) True XLOC_030822
TCONS_00061513 lncRNA downstream 808654 7725064 ~ 7725275 (-) True XLOC_030818
TCONS_00061512 lncRNA downstream 821705 7691875 ~ 7712224 (-) True XLOC_030815
TCONS_00059977 lncRNA upstream 23587 8637804 ~ 8640000 (-) False XLOC_030831
TCONS_00061515 lncRNA upstream 23643 8637860 ~ 8639434 (-) True XLOC_030831
TCONS_00061516 lncRNA upstream 26461 8640678 ~ 8644183 (-) True XLOC_030832
TCONS_00059986 lncRNA upstream 345511 8959728 ~ 8963775 (-) True XLOC_030839
TCONS_00061517 lncRNA upstream 416023 9030240 ~ 9031751 (-) True XLOC_030840
TCONS_00059971 mRNA downstream 50392 8417184 ~ 8483537 (-) False XLOC_030827
TCONS_00059970 mRNA downstream 50392 8417184 ~ 8483537 (-) False XLOC_030827
TCONS_00059972 mRNA downstream 50472 8418240 ~ 8483457 (-) True XLOC_030827
TCONS_00059968 mRNA downstream 127737 8355647 ~ 8406192 (-) False XLOC_030825
TCONS_00059966 mRNA downstream 362304 8111350 ~ 8171625 (-) False XLOC_030823
TCONS_00059975 mRNA upstream 2450 8616667 ~ 8636168 (-) True XLOC_030829
TCONS_00059978 mRNA upstream 47197 8661414 ~ 8682590 (-) False XLOC_030833
TCONS_00059980 mRNA upstream 70435 8684652 ~ 8711157 (-) True XLOC_030834
TCONS_00059981 mRNA upstream 98581 8712798 ~ 8765428 (-) True XLOC_030835
TCONS_00059983 mRNA upstream 154852 8769069 ~ 8817841 (-) True XLOC_030837
TCONS_00059969 other downstream 145751 8381704 ~ 8388178 (-) True XLOC_030825
TCONS_00059964 other downstream 561050 7972759 ~ 7972879 (-) True XLOC_030821
TCONS_00059954 other downstream 901110 7632695 ~ 7632819 (-) True XLOC_030816
TCONS_00059951 other downstream 1102406 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059949 other downstream 1385522 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059976 other upstream 21051 8635268 ~ 8635392 (-) True XLOC_030830
TCONS_00059979 other upstream 64246 8678463 ~ 8682371 (-) True XLOC_030833
TCONS_00059982 other upstream 108711 8722928 ~ 8723043 (-) True XLOC_030836
TCONS_00059989 other upstream 552178 9166395 ~ 9170534 (-) True XLOC_030845
TCONS_00059990 other upstream 559321 9173538 ~ 9179436 (-) True XLOC_030846

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000338_00053205_00083138.mRNA False 4789 mRNA 0.52 34 CI01000338 53109 ~ 83138 (-)