RNA id: TCONS_00059977


Basic Information

Item Value
RNA id TCONS_00059977
length 359
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_030831
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8637804 ~ 8640000 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttttaattatgaaaaagttaataatgactttaaaaagcTGTGTTTCTTCTGTTGTGGACAGGGATCAGGAGGACTTTTATGATGACGCAGGCGTCATGGACCAAACACAAGCATCACTAGTGTCCAATACCAAAAACTCAGCACAAGCATTTTCCTTCCTCCCCCCACCTCCACCTGGTCATCCGACAATCACATCTGTGACTCCGCCCCCTCCGGCAGACTTCTCATttctccctcctcctcctccaacGGATCAGGAAGACTTGTATGATGACACAGGTGTCATGGACCAAACACAAGGTCTGTTATTTACCTTAGTTTCTAATAaatgttaaaggaatagttcacccaaaatgaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061936 lncRNA downstream 220971 8409461 ~ 8416833 (-) True XLOC_030826
TCONS_00061935 lncRNA downstream 312789 8317718 ~ 8325015 (-) True XLOC_030824
TCONS_00061514 lncRNA downstream 541778 8093285 ~ 8096026 (-) True XLOC_030822
TCONS_00061513 lncRNA downstream 912529 7725064 ~ 7725275 (-) True XLOC_030818
TCONS_00061512 lncRNA downstream 925580 7691875 ~ 7712224 (-) True XLOC_030815
TCONS_00061516 lncRNA upstream 678 8640678 ~ 8644183 (-) True XLOC_030832
TCONS_00059986 lncRNA upstream 319728 8959728 ~ 8963775 (-) True XLOC_030839
TCONS_00061517 lncRNA upstream 390240 9030240 ~ 9031751 (-) True XLOC_030840
TCONS_00061937 lncRNA upstream 467085 9107085 ~ 9127559 (-) True XLOC_030843
TCONS_00061518 lncRNA upstream 504367 9144367 ~ 9146777 (-) False XLOC_030844
TCONS_00059975 mRNA downstream 1636 8616667 ~ 8636168 (-) True XLOC_030829
TCONS_00059973 mRNA downstream 23587 8533929 ~ 8614217 (-) False XLOC_030828
TCONS_00059974 mRNA downstream 34867 8538736 ~ 8602937 (-) True XLOC_030828
TCONS_00059971 mRNA downstream 154267 8417184 ~ 8483537 (-) False XLOC_030827
TCONS_00059970 mRNA downstream 154267 8417184 ~ 8483537 (-) False XLOC_030827
TCONS_00059978 mRNA upstream 21414 8661414 ~ 8682590 (-) False XLOC_030833
TCONS_00059980 mRNA upstream 44652 8684652 ~ 8711157 (-) True XLOC_030834
TCONS_00059981 mRNA upstream 72798 8712798 ~ 8765428 (-) True XLOC_030835
TCONS_00059983 mRNA upstream 129069 8769069 ~ 8817841 (-) True XLOC_030837
TCONS_00059984 mRNA upstream 192299 8832299 ~ 8910703 (-) False XLOC_030838
TCONS_00059976 other downstream 2412 8635268 ~ 8635392 (-) True XLOC_030830
TCONS_00059969 other downstream 249626 8381704 ~ 8388178 (-) True XLOC_030825
TCONS_00059964 other downstream 664925 7972759 ~ 7972879 (-) True XLOC_030821
TCONS_00059954 other downstream 1004985 7632695 ~ 7632819 (-) True XLOC_030816
TCONS_00059951 other downstream 1206281 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059979 other upstream 38463 8678463 ~ 8682371 (-) True XLOC_030833
TCONS_00059982 other upstream 82928 8722928 ~ 8723043 (-) True XLOC_030836
TCONS_00059989 other upstream 526395 9166395 ~ 9170534 (-) True XLOC_030845
TCONS_00059990 other upstream 533538 9173538 ~ 9179436 (-) True XLOC_030846
TCONS_00059992 other upstream 539822 9179822 ~ 9186906 (-) False XLOC_030847

Expression Profile

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