RNA id: TU2176


Basic Information

Item Value
RNA id TU2176
length 390
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G1582
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4838096 ~ 4843291 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGGCTGCCTCTCTTCCCCGGGTTCAGCACCAGCAGCTTCTTCAGCAGGTTCTCACAGTCAGTGGACATGTAGAAGGGGATCCGGTACTTTCCTCGGAGGACACGCTCCCTCagctcctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacagacacacagacacacagacacagacgcagacacacacacacacacagacacacacacacagacacacacagacacacacacacacagacacacacacacagacacacacacacagacacacacacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2171 lncRNA upstream 675 4821739 ~ 4837421 (+) False G1578
TU2170 lncRNA upstream 9740 4821739 ~ 4828356 (+) True G1578
XR_005639997.1 lncRNA upstream 127217 4708204 ~ 4710879 (+) True LOC120563678
TU2151 lncRNA upstream 128399 4709280 ~ 4709697 (+) True G1562
TU2074 lncRNA upstream 317610 4520172 ~ 4520486 (+) True G1493
XR_005640003.1 lncRNA downstream 180739 5024030 ~ 5024922 (+) True LOC120563689
TU2205 lncRNA downstream 191274 5034565 ~ 5036535 (+) False G1600
TU2223 lncRNA downstream 224498 5067789 ~ 5071935 (+) True G1612
TU2412 lncRNA downstream 381502 5224793 ~ 5225428 (+) True G1761
TU2425 lncRNA downstream 439656 5282947 ~ 5283355 (+) True G1771
XM_039807783.1 mRNA upstream 31389 4795309 ~ 4806707 (+) False zgc:172076
XM_039807998.1 mRNA downstream 13395 4856686 ~ 4939470 (+) True LOC120563657
XM_039807881.1 mRNA downstream 104367 4947658 ~ 4949112 (+) True LOC120563603
XM_039807646.1 mRNA downstream 315590 5158881 ~ 5179742 (+) True LOC120563472
XM_039807655.1 mRNA downstream 318316 5161607 ~ 5179742 (+) False LOC120563472
XM_039807615.1 mRNA downstream 336905 5180196 ~ 5197117 (+) True LOC120563443
TU2062 other upstream 377692 4455207 ~ 4460404 (+) True G1487
TU1916 other upstream 402072 4433376 ~ 4436024 (+) False pex6
TU1635 other upstream 1338992 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 1357966 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 1578338 3255917 ~ 3259758 (+) False dzank1
TU2210 other downstream 134492 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 191274 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 374777 5218068 ~ 5222744 (+) True G1756
TU2415 other downstream 392055 5235346 ~ 5327757 (+) False LOC120563544
TU2438 other downstream 529326 5372617 ~ 5374907 (+) True G1775

Expression Profile