RNA id: TU2074


Basic Information

Item Value
RNA id TU2074
length 315
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1493
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4520172 ~ 4520486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtgggtttggtgatggtgatttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaaggtctatctctgtagggatccatcctaTAATGTGTGTGATACATAGAGTCCTTTGTTTGTAAAATCTGGCtgtgaagatgaagatgaagctGCTGAATCGTCTCATTAAAAACTACATTTGTACCATCGGactgtttctgtttttcacaTCTGTACACAaactcacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2064 lncRNA upstream 50063 4469806 ~ 4470109 (+) True G1489
TU2066 lncRNA upstream 50063 4469806 ~ 4470109 (+) False G1489
TU1925 lncRNA upstream 69596 4443784 ~ 4450576 (+) True G1385
TU1921 lncRNA upstream 95918 4420462 ~ 4424254 (+) True G1383
XR_005640723.1 lncRNA upstream 181407 4336864 ~ 4338765 (+) True LOC120568418
XR_005639997.1 lncRNA downstream 187718 4708204 ~ 4710879 (+) True LOC120563678
TU2151 lncRNA downstream 188794 4709280 ~ 4709697 (+) True G1562
TU2170 lncRNA downstream 301253 4821739 ~ 4828356 (+) True G1578
TU2171 lncRNA downstream 301253 4821739 ~ 4837421 (+) False G1578
TU2176 lncRNA downstream 317610 4838096 ~ 4843291 (+) True G1582
XM_039815752.1 mRNA upstream 3096 4499013 ~ 4517076 (+) True rcor3
XM_039815639.1 mRNA upstream 84086 4408438 ~ 4436086 (+) True pex6
XM_039815632.1 mRNA upstream 84086 4409259 ~ 4436086 (+) False pex6
XM_039815719.1 mRNA upstream 187272 4312607 ~ 4332900 (+) True tpcn3
XM_039815663.1 mRNA upstream 250701 4253119 ~ 4269471 (+) True LOC120568266
XM_039815739.1 mRNA downstream 613 4521099 ~ 4538660 (+) True traf5
XM_039815731.1 mRNA downstream 1493 4521979 ~ 4538660 (+) False traf5
XM_039807798.1 mRNA downstream 262867 4783353 ~ 4806707 (+) False zgc:172076
XM_039807783.1 mRNA downstream 274823 4795309 ~ 4806707 (+) False zgc:172076
XM_039807791.1 mRNA downstream 274823 4795309 ~ 4806707 (+) False zgc:172076
TU2062 other upstream 59768 4455207 ~ 4460404 (+) True G1487
TU1916 other upstream 84148 4433376 ~ 4436024 (+) False pex6
TU1635 other upstream 1021068 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 1040042 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 1260414 3255917 ~ 3259758 (+) False dzank1
TU2210 other downstream 457297 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 514079 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 697582 5218068 ~ 5222744 (+) True G1756
TU2415 other downstream 714860 5235346 ~ 5327757 (+) False LOC120563544
TU2438 other downstream 852131 5372617 ~ 5374907 (+) True G1775

Expression Profile