RNA id: TU1461


Basic Information

Item Value
RNA id TU1461
length 496
RNA type TUCP
GC content 0.51
exon number 4
gene id dzank1
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3175601 ~ 3259758 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTGACGCTTCGGTACACGGCCGCAGGACTCGGAGCGAAGCAGCATCACGTTGGTTCATCTCATCTCTGATCTCAAATGGTTTCTGCCGTGATCCAGGAAGATCGCTACGAGGTCAGCGTGACCGTCAGCTTTGTGTCGTCTGCACGGGAAGAACCACAGGTGGGTCCAGCAACAGACGGTGCTGATCCTGCAGGTCGGACCGAGACTCTGAGCAGCGTCACGGAGAGATCTGCCGACAGCAGCGCTCTCACTGTCAGGCCGGTGTGCGGTGGAGGAACGGCGGCGGGCAGACAGCGTACGACGTGGCGGTGAACTCCGGCTGCAACGACATGGTGTCTCTGCTGGCTGCTCGGACCGGACTGGACCTACTGGGAAAACTGGGAAAACTCAAACTGAACCTGGACGTTTTTTGAGATCTGCCTTTGCTGGATCTGAAACGTCCAGATGTTGTTATAAACACTTTTGAgattattaaataaaaagttgTCGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1417 lncRNA upstream 120556 3096362 ~ 3135361 (+) True G1045
TU1311 lncRNA upstream 172781 3082231 ~ 3083136 (+) True G959
TU1307 lncRNA upstream 175727 3079048 ~ 3080190 (+) False LOC120567073
TU1308 lncRNA upstream 175727 3079048 ~ 3080190 (+) False LOC120567073
TU1309 lncRNA upstream 175727 3079048 ~ 3080190 (+) False LOC120567073
TU1469 lncRNA downstream 11255 3271013 ~ 3272231 (+) True G1093
TU1475 lncRNA downstream 65857 3325615 ~ 3384416 (+) True G1098
TU1476 lncRNA downstream 65857 3325615 ~ 3384416 (+) False G1098
XR_005637832.1 lncRNA downstream 79737 3339495 ~ 3341743 (+) True LOC120551115
TU1548 lncRNA downstream 140309 3400067 ~ 3400331 (+) True G1145
XM_039798404.1 mRNA upstream 96625 3157203 ~ 3159292 (+) True LOC120557788
XM_039798413.1 mRNA upstream 96625 3157203 ~ 3159292 (+) False LOC120557788
XM_039798348.1 mRNA upstream 98779 3128089 ~ 3157138 (+) False LOC120557752
XM_039798356.1 mRNA upstream 98779 3128089 ~ 3157138 (+) False LOC120557752
XM_039798365.1 mRNA upstream 98779 3128096 ~ 3157138 (+) False LOC120557752
XM_039787401.1 mRNA downstream 105058 3364816 ~ 3373141 (+) True LOC120550686
XM_039805633.1 mRNA downstream 153667 3413425 ~ 3448493 (+) True rrbp1b
XM_039794054.1 mRNA downstream 208389 3468147 ~ 3478516 (+) False LOC120555387
XM_039794067.1 mRNA downstream 228585 3488343 ~ 3490010 (+) True LOC120555395
XM_039805718.1 mRNA downstream 304964 3564722 ~ 3568010 (+) True LOC120562172
XR_005639016.1 other upstream 98779 3128089 ~ 3157138 (+) True LOC120557752
XR_005639017.1 other upstream 98779 3128089 ~ 3157138 (+) False LOC120557752
XR_005640520.1 other upstream 184444 3068613 ~ 3071473 (+) True LOC120567079
TU1184 other upstream 554942 2626243 ~ 2700975 (+) True G879
XR_005640344.1 other upstream 687559 2558876 ~ 2568358 (+) False LOC120566146
TU1593 other downstream 208366 3468124 ~ 3480130 (+) True LOC120555387
TU1635 other downstream 238003 3497761 ~ 3499104 (+) True G1191
TU1916 other downstream 1173618 4433376 ~ 4436024 (+) False pex6
TU2062 other downstream 1195449 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 1718025 4977783 ~ 5038714 (+) False G1600

Expression Profile