RNA id: TU1635


Basic Information

Item Value
RNA id TU1635
length 1322
RNA type TUCP
GC content 0.44
exon number 2
gene id G1191
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3496606 ~ 3499104 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcgcgagCATCAGCAGGTCGAGTCCCGGCGACCTGCGGTGGGATCGGGAGTCCAAAAAAAGTCACGAGTGCGAACGAACCAAAAATCCAACCCAGGCACGAATGTTTGAAACCCTCCTCCCCCCTTTTTCAACCCcccagagagaaacacagagaaaggTTTGGCGTCGTCGTGGTTATGTACAGTGAGCTCCGCTGGAGACAGTTCGGTGCAGGGCTGGGTGTTGGCGAGCCGGCCGCCGGCGTCAAAAGGTCAGGGTCAAGTCTTCGAGCCGGGAGGGCGTGGAGCTAGAACGGCGTCACTCAGTCCGTCTGCGTGGGCTCAGCTCGGTTCTGCTAGCTCCGCCCCCTCCCTCTGGTGGCTCCACCCCCAGCTACTGGTGGACCTCGTTGGCTATCAGACTGTCCTCCCCTGACTGAAAATCCGCCTCGTTGATGCTGTTCCCGCCGTTGAGCATCTCGTCGTCCTGGGACGAGCCCCGGTCCTCCTCGCCGCTGCCGCCGGCCGGGTCGTCTAAGTTTGGGTCCTGGAGAACCTGGGCGATGtacatctgctgctgctgctgctgctgctgctgctgggacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacagagacacacacacacacacacaacacacacacacacacacacacacacacacacacacacacacacagacacacacagagcaacacacacacacagacacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacagacacacacacagagacacacacacacacagagacacacacacacagagacacacacagagacacacacacacacacacacacacacacagagacacacacagagacacacacacacacacacacacacagagacacacacacacacacacacacacacacagagacacacacacacacacacacacacacagagacacacacacacacacgagacacacacacacacacacacagagacacacacacacagagacacacacacacacacacacacacacacacagagacacacacacacacacacacacacagagacacacacacacacagagacacacacacacacacacagagacacacacacagagacacacacacacacacacacacagacccacacacagagacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610 lncRNA upstream 2998 3491944 ~ 3494763 (+) True G1189
TU1612 lncRNA upstream 2998 3491944 ~ 3494763 (+) False G1189
TU1561 lncRNA upstream 55583 3435944 ~ 3442178 (+) True G1156
TU1549 lncRNA upstream 94063 3400904 ~ 3403698 (+) True G1146
TU1548 lncRNA upstream 97430 3400067 ~ 3400331 (+) True G1145
TU1654 lncRNA downstream 54645 3553749 ~ 3554040 (+) True G1205
TU1651 lncRNA downstream 61197 3560301 ~ 3578867 (+) True G1203
TU1656 lncRNA downstream 62363 3561467 ~ 3579755 (+) True G1207
TU1675 lncRNA downstream 150447 3649551 ~ 3650138 (+) True G1218
TU1677 lncRNA downstream 162748 3661852 ~ 3677073 (+) False G1219
XM_039794067.1 mRNA upstream 7751 3488343 ~ 3490010 (+) True LOC120555395
XM_039794054.1 mRNA upstream 19245 3468147 ~ 3478516 (+) False LOC120555387
XM_039805633.1 mRNA upstream 49268 3413425 ~ 3448493 (+) True rrbp1b
XM_039787401.1 mRNA upstream 124620 3364816 ~ 3373141 (+) True LOC120550686
XM_039805490.1 mRNA upstream 238003 3175601 ~ 3259758 (+) True dzank1
XM_039805718.1 mRNA downstream 65618 3564722 ~ 3568010 (+) True LOC120562172
XM_039808845.1 mRNA downstream 147920 3647024 ~ 3655642 (+) True psen2
XM_039806858.1 mRNA downstream 293642 3792746 ~ 3814570 (+) True LOC120562910
XM_039815757.1 mRNA downstream 745154 4244258 ~ 4247932 (+) True pgap4
XM_039815663.1 mRNA downstream 754015 4253119 ~ 4269471 (+) True LOC120568266
TU1593 other upstream 17631 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 238003 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 340623 3128089 ~ 3157138 (+) True LOC120557752
XR_005639017.1 other upstream 340623 3128089 ~ 3157138 (+) False LOC120557752
XR_005640520.1 other upstream 426288 3068613 ~ 3071473 (+) True LOC120567079
TU1916 other downstream 934272 4433376 ~ 4436024 (+) False pex6
TU2062 other downstream 956103 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 1478679 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 1535461 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 1718964 5218068 ~ 5222744 (+) True G1756

Expression Profile