RNA id: TU3804


Basic Information

Item Value
RNA id TU3804
length 6251
lncRNA type sense_over
GC content 0.45
exon number 4
gene id G2732
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7642122 ~ 7662768 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaaaaagtaaaaaaaaaaaaaatatccccaaaaaaataatgtttcttTCTCATACATTTGCCATGGCAACGCACATTCCCCCAATCCCATGGCGATGGAAACCACTGTCTACCGGTTCAACACACAAAAGAGGGACGAGAACGGACGAGTCTGTATGATTCCTTTTCATCGTTGCAGTGttactactttttacttttctcCACCCAttgtgttctctttttttttctctctctctctctctcgcgttTCTACTTCTTTAGTtagttctttttcttttgaaaacaggaagaagaagaagaagaaaaaaaaaaaaaacactaaactgCCAGAAACTGCACAGTTCACTCAGGCGCCACAGAGCACAACCGCGTTCAAACTCAGCTAACCGCTCCAGCTTTCCACAGCCGGCAGGGGAATGAGGCCTTTTCTCTGCTTTCTCAccgcttctcctcctcctccttctcctcctcctccttctcctcctcctcctcctccttctcctcctcctcctccgtttCTTCACCTCTGCTTTATGTTTCCTCATCGTAGCTGTAGGACTAGTGGAATGGGTGTTTACACAGGGAAATGTGGcttaatgtatgtatgtatgtatgtgggaCATGGGGGTCAACTTTATGctgtcatcacacacacacacacacacacaaacaaacacacacacatacagtatatatatttagaCTCAGAAACAGGAAACAGCTGTGAGATCAGACTGAAGTCGGCAGTTCACTCCACACTAAAAATGAAACTTGGCGTTTTtgtaaaatgagcagaatatatCCGAACACTCGCTGCatctacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttcgtgtgttctCAACAGCTCCTGTCAGGTGAAGCTGGACTCTCTGCTGCGAGTCGAAGCCAGTCCACTCAGAGAGGCAGTTCAGTTGTCCGTCTGCAAATTTGTATATCCTCAGGTAAAGGATACACGCTACAAGCCCGGTGAAATATGAACCTGACCTGAAAGGCAGTCGAGTCCTGCTATGAGCATTTACCGTTAAAGTTTCAGCGTGGCGGAAGACGTAAATGAAAAACAGTTAACCCTCCATTTTTCCGTGGCGCGTTTGCAGCTGTCCTTCCTCGAACTAAAAAAACTCTTCTTCGTCCGTCGAACAGACCGACAGTTCACGCGATATTTCAGGACACAAAAGAGTTTTCCTTTTAGCTTTCAGCTGCTACTCGGTGAGACGGTCTGGGTCCCACGCTCTTGATACGAACTAACTACGTAAGAGATCGGTGAGGGTTATCTTGGCAGTTCAAATCGGAAACGAATGTAGGGAGGAGGGCGTTTTCAAATGCAGTTTGCACGGCTAAAGTCTGTTCAGTTTACGTGATATTTCTGGACATACAGAGAGTTTGTTCGGGCGTTCTTCCTTGTAGCTTTCAGCTGCTACTCGGTGAGACGGTCTGGGTCCCACGCTCTTGATACCAACTAAGAATCTAAAGAGATTGGTGAGGGTTGTCTTCTGCATTTCAAATCGCAAACGAATGAAGGGAGATGGGCGTTTTCAAAATGCAGTTTGAACGGTTCAAATCTGTTCGGCCACTGGGGGGGATATCAACGTCCAAAGTCAAGGACATAGGCGTAGGTTTGAAGgagtttaaaggtgcactatgacttcctgcatggtttcattTTGGTCTCAAATCGTAGTCATCTCTCCGTTGACCccctagctgcctgcccccctgAATACACCGTGTCTCGGGAGACAACCCAGGGCTCGTAAACGTCAAATAAACActtaggggcacaggctgtgcaccaaaacacaaccaaccactccagccaatcaccgacgaGATGGTtggttagtcatgacagttacagAAACAttgggggaggggcgagcttgctctgtttacgTCAACGGAAGTGACGTCGTGCAGGAACTCGTAGTGCGCCTTTAACGTAACATGACCCAGAGAAACATAAACGCTGAGAACGTTAAAACCCTTTTGGAAAGCTTCCGTTAATGTGACATTAAGAGGATATTAGGCTGAGGAACAAAGGACCCTGGGAACACAGACACGCTCCCGTCTAAATGTTATCACGCTAACTCGCTAACTATTCGCTTTCTTGTCCGTGTGATAGCGAGTTCGATACCTCTCTCACGTCCGCGTGTAAAGCagattctttgtaaatcttttacAATCCTTCCCCAGGAAGAACCGAGCAGGCCTGCCTAGTCGCGCCCTCCAAATCTTctccaaaacttgacattttcagcgtgtagcctgctagctcgaagtttgctGTTGTTTCCCGAAGTGGAGTTtaagaacagcaacacacacacacagagagagagagagagcgtaaGGTGAGTAGGGcagctccctcttagtcgattagtcgactaatcggtcgttttggtcttcgtcaacttagatctctttagtccattagtcatgtctgatgttgttttcacgctgaatgacttatttccaagaaacgtacgagcacatctctggtaaacacaagaattaaagtggtgcttttagcaggactctttgtggagaaactcagatttacagatctgtcgattaaatcaactaatcgattagtcgatgcAGTTGAACGAGCGTTAGTCGACTGAGAATTTCTTccatcgagcacagccctacaggTGAGGGAAAACGCGCGCCGCACCTCAGGCAATTATCCCGAAAATGTCCTTCCGTTAATCCACTACACTAAACACGACAAAGACAGACCAGATAGATGTTGGTTTGTTCCTGGTATCGGAGATCCGACCCAGGACCACCGGCGCAAATTTGcgtttcctaggatggcgaagCCTCccgattggcttaccctggtatCCTAACCCTCACCAATCTCACTCCTCGTGCCCAAACCTAACCAAGGCAACGAGTATTAGCCAATCACAGGCAGAGTAGGGCTGGACCTGCCTTCGCCGTCAGAGGAAAACGCAAATTTGCGGACCCGAGTGGGGCCGGATCCAGAGTATGTTTAGTCTAATCGGCTCAGTTAGGGTCCCGTTGCAGATGAAAATAACTGAATACCTACATGTACAACTACAACCAATGTTAGTCTACAAATATGTCCACATAGTATAcggctatgttcacacttggcgtctttttttGAAGCTGCTAGCGTTTGTTTACGTTATAATCCTGTGGAGTAAACAAAAAGGTCCTGAGCGCTTTTTTAAACGCCAGCGgcgacttcttttttttttgcagctcaGAGCGTCTTTTTGAAGGTGAAAAAAGTTCTGCTTTTCTGAAAAAATAAACGCCCTGCGTCAAGTGCTTTTTTTTGACAGCCGACCAATGAAAGgcggagtagccagacctgtcGTTTCCATAACAACGAGAAAACATGGAGTCGGAGCACAGCGAGCTATACGGTATGACCGGGTGCTCCCTGTTCAGGGAActcgctttgttttatctaacgttagcatctctctctctctctctctctctatctatctctctctctctctctctctctctgttctttctctagctcgctccaccactttgtttatctaacgttagcattgctctctctctgttctttctctagttcgctccaccactttgtttatctaacgttagtatctctctctctctctgttctttctctagctcgctccaccactttgtttatctaacgttagcatctctctctctctgttctttctctagctcgctccaccactttgtttatctaacgttagcatcgctctctctctctgttctttctctagctcgctccaccactttgtttatctaacgttagcatctctctctctctctgttctttctctagttCGCtacaccactttgttttatctaacgttagcaccgctctctctctctgttctttctctagctcgctccaccactttgtttatctaacgttagcatctctctctctctctgttctttctctagttcgctccaccactttgtttatctaacgttagcatctctctctctctctctctgttctttctctagctcgctccaccactttgtttatctaatgttagcatcgctctctctctctgttctttctctagctcgctccaccgctttgtttatctaacgttagcaccgctcCACATAGCGCTCTAGCTAGGATACGGTAGCAATAGCTGTTGTCATAGCAACAAAACAAGCTCTCGGCTGCTTTTCGGAATAAAAACGCTgccagcttctttttttttctctcgctacaaaagcgccctagtcaactttttcttgtcaaaaaaaagACGCCAAGCGTGAACACAGCCTtagtctggccagtccacacagccttcctggatgggagaacaatgtgctctggtttattggcatttctttaaaccaaccacATTCGTctcgggcggcgctaagcgcagGTCAGAGCCGCTGCCAAGGAACTGGTTCTGgcggaacatgtggacgttcaaaagtagtttttagtcgtgcaacagaaacctGAAACGTAGTCGATACGGACTAAACCTGCGCTAGTTTAGAACGGTGTCCACGTCGTATTAACGCAGTGAGTCCCGCCCCCCTAGTGGTCGGAGAGAGAACCTTTTGATTCACATTTAACTGACTCGTAAGGTACTGAATCCAAAAAAACGACACTATGAACTCTCCGCGTTGTTCGGGAACTAAACGCGAAGCCTCTTTGTCGGTTGCGTATCGACCGTTTCACCgcctataaaaaagaaaaaaaacacgtcTGATTGAACGTTTTCTGGAGAACACACCGCCCACTTCGTCTGCTCTGCTGCTCTCAAGTCACTCGTCAGGGTTCCTGCACACATCTGGGGAGGATTTGGGGAGGATTTCCAGGTCCTAATTGCAAAAGGTGTTTTGGgaaaaaatcattgtttttgtgatgaaGTATGTCATCCCCCATACTCTTTAAGACTCACATgtacaagagaggagagaaatgtGACTGTGAAACATATCGAACAGTGAGTGACAACGTGTTTTGTTGAGGacatttttgtgtttctttttaccGTGACTGTGAAGGAACCctgacaagcacacacacacacacacacacacacacacacacacacattcatattcaCACGCAGATACACAAAAGACTGTTTTTTAGACGATAGATCAGAGTGAAGAAGATTTAATTTATCACACGGACACTAACGGAAACGAGGCTTCCAGATGCAGGGGTTCTGTCCTGTCAGTATTATGagatattacatttatttacacacacacacacacacacacacacgttttaatCCTGAACAGAGggtatcaatatcaataaatcaCTAATCATGTCACAGATCACGAGAAAACTGAGCCGTGAGACACTCATGTATGAAGACTGTGAGGactgccagaaaaaaaaaaaaaaaaagttgagtcGCCCCAAAACTTGTTGATGTAAATATGcaatgcctttttattttttattttttttggggaggggAGGGTCTTTTGTGGCATCCTGACAGACAacacaaacctttttttttctgtgcgaCTGTACTTTGCGAGCTTGCCGATGtgaaaatacaacaacaacaacaaacgaTTCAAAAACTGcatttaagaaaaacattttaaaaaaaataaaaaggagggagaaaaaaaatgaaataaagacaGCGTCAAAGACTGGACCCTTCCGTTGAGCTTCTCGGGGTCGATACACAGACTCGGCTTTCTATCGTCCACGGAGGATGTTTCCATGGAGACaacacccccccctcccccctctcccccctgcCTTCCTTCGGTCGCCATGGTCCCCGAAAACGATCATCGACTCCTGATTTTCTGTGAGAGGACACGACTGTACCTGTGGAGTCTGCACTGTCATTACTGGTTTCTCTTCACCCTcttttaaaatggaaaaaaatatatatatatatatatatatatatatacaaaaagtgGGACCATGGAGgactttttatttcaattttttctttctctttttatttttgcagtGCTGGTTTCATCAGGTTGTTCCACCAATCCCATCATCCCTTgctcctcctctttttttgttttttttgtaccatagtatgttttatttatctttGTCATCCTAGGCAGTGTTACCTTGTATgtcgtttgaaaaaaaaaaag

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0008380 RNA splicing biological_process
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3815 lncRNA downstream 8778 7632374 ~ 7633344 (-) True G2743
XR_005640671.1 lncRNA downstream 201055 7433916 ~ 7441067 (-) True LOC120568185
TU3435 lncRNA downstream 203850 7436474 ~ 7438272 (-) True G2451
XR_005640658.1 lncRNA downstream 365579 7271819 ~ 7276543 (-) True LOC120568064
XR_005640135.1 lncRNA downstream 373733 7263691 ~ 7268389 (-) True LOC120564702
TU3805 lncRNA upstream 20136 7682904 ~ 7690535 (-) False akt3b
TU3824 lncRNA upstream 59169 7721937 ~ 7722318 (-) True G2750
TU3831 lncRNA upstream 100225 7762993 ~ 7763948 (-) False G2752
TU3843 lncRNA upstream 151025 7813793 ~ 7860439 (-) True G2759
TU3863 lncRNA upstream 273172 7935940 ~ 7938937 (-) False capn9
XM_039818941.1 mRNA downstream 28420 7602033 ~ 7613702 (-) True cct4
XM_039817113.1 mRNA downstream 40583 7585395 ~ 7601539 (-) False fam161a
XM_039817105.1 mRNA downstream 40583 7585395 ~ 7601539 (-) True fam161a
XM_039815533.1 mRNA downstream 60098 7554032 ~ 7582024 (-) True xpo1a
XM_039804037.1 mRNA upstream 227939 7890707 ~ 7895739 (-) True LOC120561073
XM_039804049.1 mRNA upstream 252430 7915198 ~ 7931404 (-) False ltv1
XM_039804042.1 mRNA upstream 252430 7915198 ~ 7931403 (-) True ltv1
XM_039816074.1 mRNA upstream 273172 7935940 ~ 7957621 (-) True capn9
XM_039804856.1 mRNA upstream 306582 7969350 ~ 7979457 (-) True taf5l
XR_005640903.1 other downstream 69665 7572321 ~ 7572457 (-) True LOC120569585
XR_005640913.1 other downstream 84224 7557767 ~ 7557898 (-) True LOC120569612
XR_005640861.1 other downstream 269564 7331956 ~ 7372558 (-) True LOC120569296
TU3357 other downstream 401994 7225340 ~ 7240128 (-) True commd1
unassigned_transcript_11 other downstream 599104 7042947 ~ 7043018 (-) True trnae-uuc_9
TU3830 other upstream 77056 7739824 ~ 7763948 (-) True G2752
TU3971 other upstream 544484 8207252 ~ 8209535 (-) False G2840
TU3972 other upstream 544484 8207252 ~ 8209535 (-) False G2840
TU3973 other upstream 544484 8207252 ~ 8209535 (-) True G2840
TU4012 other upstream 820944 8483712 ~ 8501141 (-) False wipf2a

Expression Profile