RNA id: XM_039799381.1


Basic Information

Item Value
RNA id XM_039799381.1
length 3265
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120558399
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13870863 ~ 13882237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCATGCTGACACTCTGACGTGCGCGTGGATGTGTACGTGGGGCTTTCCACAGCAGCTCGGAGTACATACTCGGAGCCATGGCGACAGCTGTTCAAGCAGAAATATTTATCTCCGTCGTGGACTGTTTGATTCGGGTTTAACTTACGATAAGCTTACGTAAGTTATTTTAACCAGATAGTTATAATGTCAACCTCCAGCTGGTCACCACTCAAAGGCCATTCCTGAGACGAGGCTTTGATATATTGCACCAGATGGAGTGGCATTCATCAGATGACAGTCTGGGAGCATTAATGGACAACCCCCCTCACTTTTCGGAATCTCCTCAGTCGAATCCCTCCGCCACCATCCTCTCAGAAAATGAAGTCTCATGCCACTGTTGCTACGACATCTTAGTGAACCCCACCACCTTGACCTGCGGCCATAACTTTTGTCGACACTGTCTGGCTCTGTGGTGGGAGTCCTCTCACAAGAATGAGTGTCCAGAGTGCCGGGAGAAGTGGGAAGGCTTCCCTAAAATCAACATACTGCTGAGGGATGCAACTGACAAGCTGTTCAGTGAGGTCGTTGAGCGGAGAAGAGCAGAGATCCAGAATAACCCCAAAATCTCCCGGAGTTTGCTAGCCTTTCAGAGGTATGGTGACAACTTGGGAAGATCCAAGACCAACCAGCACAAAGGAGCaggcttcttcttctctggagTCCTGACTGCACTCACATGTGTGGCTGTGATTGTGCTGGTGTATCACTGGAGCAGTGGTGTGGTGGAACAGCATGACCTGCTGATAAGTAAACCCGTGTCTTACTGGACGCCGGAGGAAGTTGTGTCCTGGCTGGAAAACTTGGGGCCCTGGGCCCAGCTTTACAGAGAACCCTTCCAGCAGGAGAACGTCAATGGAagGCTACTTTTGATGCTGGGGGAGGAAGAGTTGTTAAAACCTCCTTACAGCATAGAAAACCAGGCTCACCGACGGGCTGTTTTGGCAGAACTGGACAGAGTTAAAGCCCTTGGTGTGAAACCTCCGCAGAACCTCTGGGAATACAAGGCTACTAATGCAGGGAAGTCACTGTTCTTGCTGTATGCACTGAAGCGCTCCCCTCGTCTCACAATcttctatttgtatttattcGATTACTCTGAAACCTTCCTGCCCTTCCTGCACACCTGCTGTCCAGCAATCACACACTCAGTGGAGAGCAGCTTCCTCAACACACAGttgGAGCCCAGTTGGCGACAGTGGGCAGAGTTTCTTGTAAAGTACCTCCTGCTTCCATACCAGCTGATAGCAGAGTTTGCTTGGGACTGGCTGGCCGTCCACTACTGGACATCACGCTTCATTATTGTTAACGCCATGCTGCTGTCTGTGCTGGAGTGCTGCGCCCTGTGGAGACTCTGGACAAGAGTCCGAATCAGGTCTCTGCCGCGCAAGATGTGGGACCACATGTGGAAGATGTTATCTCAGGGGTTTGCCTTCGCCCTCCTGTGGCCTTTTGTCCCTCAGTTTGTGTGCAACTGCCTCTTCTACTGGGCTCTCTACTTCAGTCCCATCATTAATATAGACCTGGTGGTGCAGCACCTTATGCACCCAGAAACGCAGGCACTGTAACAAACTGCATGCAGTCATTGCCCAATTAATGCTGtacagcagagatcttcaacagggggtccggggcccctagggggtcctcagagttactgcagagGGGCCACCAtattattgttaatattttgaaagtcttttcaaaaattaaaatgtcttaacatgaatccaacatattattagcaaatataaatcagcctatttgtaaaaaacaaaacaaaaactcattgatgacctataggtaaggtagtcactgaGGTAGCCATCCACATATACAGTTAATCTTAAGGATACACtgtgcatgtatgtttaacattaaaacatgatttataaaatcatgccaactcatattttaatatctttttttttttaatctttttttttaggctgccctacacgtttaatatgcaacttaactGTGAATAAATGTAGTAGGGggtgctccgtctctctctcagttaaggggtccttggtttaaaaaacgttgaagatccctgccGTACAGTTCACAGCAAATAAAATAGCCAGAAATCCAGTTGCTGAATAGAAGTGTTTATTTTCAGCAGTATACTCACATGAGACTGGCTTATTTGCTGTTGGAAAGGACGTGCTCTCGCTTCCAGTCTCGCCTCTCTGCTGGATGGTTGCCATGTGTGACAAGAGGGGCATAGAGCTATTGTAGGAGAAACAAAAAGTGAAATATCTGTAATGTTTTTGATTAGGAAAGAGTACTGCAGTGATCTCTCTCTGCGTGCACAGTGCATTCACAAACCACATTGCCTAAATGGTCTAGAGGGCAGTTATGCAAATAAGTCATGTTCAAACTTTGGTTGTATTGAAGACTGGCCTCATAAGGAGTTTTCTGATAGCTTTGTAGCACTAAGATCGCTGTAGTCCGATGACAGGTGAGCTTTTTTTACAACAAGTATTGCTGAGTACATTTTTGTTTGACttcttttatttgtctttacGGCATGTAATCCACAACCAATTAAATGAACAACTGCTGCTTTAAATATATCAGTTTGAATGAAGCAGTGTTACTAGTTTTATATAAATCCTTATTCTATGACTTTCAATGCCTTCTTTAAATCTTTAGTACGGTTTTGGCTTTGACTGCGATCTTGGAGGTACAGAACTGTCTGAAAATTCTACAAGGTTTGGTAACATGATTGTGAAATGTGTCAAATGTTAAGGTTTGTAGTTGTGCAGCCTGATGGGAACCTCAGGCTTTACAGTTGActcaagcaaaaacaaaaacgcggtctttgtaaaaaaaatattaaacaatgAAGCGTGTTCTAGGAATCCCAGGCTTTCATTTCACAATACATGTGGCACTTTGAGATGAAACTTATGTTCTTAAAAGAAATTAAGATGCTGatacccattttttttttttcttttcaaatttttatgattttaaagAAAAACTGTCCGTAACAGATTTTATTTGCTGGTACTGCTGACAAATATTGTgttgcacattttttttatataaagatTTTGTTGGCAGTAGTAAAGATTTCCATGTGATGGGTGGGTAGAGCTAATCaaagacttttttattttttacattgttcATTTGCACTTAAAAGTTCTACACTGTGATTTTGTTCTTTAATGTTCTATAATGACAAAggaaaaataaagatttttaaataa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15684 BFAR; bifunctional apoptosis regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5668 lncRNA upstream 188343 13608925 ~ 13682671 (+) False G4141
TU5673 lncRNA upstream 207495 13608925 ~ 13663519 (+) False G4141
TU5672 lncRNA upstream 213640 13608925 ~ 13657374 (+) False G4141
TU5688 lncRNA upstream 251181 13617369 ~ 13619833 (+) True G4148
TU5669 lncRNA upstream 260302 13542975 ~ 13610712 (+) False G4141
TU5828 lncRNA downstream 16241 13898478 ~ 13901687 (+) True LOC120558516
TU5830 lncRNA downstream 20407 13902644 ~ 13903742 (+) True G4266
TU5852 lncRNA downstream 44293 13926530 ~ 13927158 (+) True G4279
TU5917 lncRNA downstream 174364 14056601 ~ 14128701 (+) False G4326
TU5918 lncRNA downstream 245272 14127509 ~ 14128701 (+) True G4326
XM_039799350.1 mRNA upstream 190801 13674528 ~ 13680213 (+) True LOC120558373
XM_039799466.1 mRNA upstream 220939 13641010 ~ 13650075 (+) True LOC120558450
XM_039799135.1 mRNA upstream 277206 13573107 ~ 13593808 (+) False LOC120558180
XM_039799218.1 mRNA downstream 622 13882859 ~ 13895119 (+) True txndc11
XM_039799549.1 mRNA downstream 16402 13898639 ~ 13901044 (+) False LOC120558516
XM_039799583.1 mRNA downstream 111819 13994056 ~ 14002247 (+) True ears2
XM_039799573.1 mRNA downstream 120411 14002648 ~ 14015551 (+) True LOC120558534
XM_039805450.1 mRNA downstream 348003 14230240 ~ 14241395 (+) True LOC120562026
XR_005639123.1 other upstream 334952 13527110 ~ 13536062 (+) False LOC120558420
XR_005639122.1 other upstream 334952 13527110 ~ 13536062 (+) False LOC120558420
TU5494 other upstream 753622 13107298 ~ 13117392 (+) True G4009
TU5477 other upstream 780554 13085123 ~ 13090460 (+) False pla2g6
unassigned_transcript_57 other upstream 890906 12980015 ~ 12980108 (+) True trnai-uau
TU6093 other downstream 769773 14652010 ~ 14655052 (+) True G4468
TU6115 other downstream 829452 14711689 ~ 14713213 (+) True G4481
TU6377 other downstream 1272002 15154239 ~ 15183169 (+) False grin2ab
TU6630 other downstream 2197723 16079960 ~ 16082354 (+) False ccdc85al
XR_005640583.1 other downstream 2404701 16286938 ~ 16301586 (+) True cep170ab

Expression Profile