RNA id: XM_039803590.1


Basic Information

Item Value
RNA id XM_039803590.1
length 1741
RNA type mRNA
GC content 0.48
exon number 10
gene id wdr83
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10647077 ~ 10655066 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTGAGGGGTGGGTAAAATGAATGGTGGAAGCGTTTGATGGTTACAAAGCAAACCGGGAAAAACGTATTAACAacgcattattattataatattagctGCACCAGGAATATCAACATGGCTCTCCCATGAAAATTGAACTCTGGTGAAACGGTTCAAgtTATGTCATCATGGCGTTCCCTGAACCCAGACCTCAGGCTCCTCAGCTCCCTCAACATCTgctcaggaccatagactgtcaGCAAGGAGCTGTCAGGGCTGTTCGCTTCAAcgCTGATGGGAACTACCTGCTGTCCTGTGGCAGTGACAAATCTCTAAAGCTGTGGAGCGTGAGCCGAGGGACCCCGCTGAAGACATACAGCGGCCATGGATACGAGGTTCTGGATGCCGATGGTTCCTATGACAACAGTCACCTGTGCTCCTGCAGCTCCGATAAGACCGTGATCCTGTGGGACGTCGCCACAGGCCAGGTCACACGCAAACTGAGAGGCCACGCCGGGAAAGTCAACTGTGTCCAGTTCAACGAGGAGGCAACTGTCATCTTGTCTGGGTCTCTCGATGGGACGGTTCGGTGCTGGGACACCAGGTCCAGAAGATTTGAGCCCATCCAGGTTCTAGACGAGGCTCGGGACAGCGTCAGCAGCCTGAAGGTGGCACAACACGAGCTGCTTACCGGGTCGGTGGATGGCAGAGTGAGGCGCTACGACCTGAGAATGGGACAGCTGCACGTTGACTTCATCAGCAGTCCCAtcacatgtgtgtgtttcagtcagGACGGTCAGTGCACTCTGAGCTCCAGTCTGGACTCAACAGTCCGACTACTGGACAAGAGCACCGGGGAAATGCTGGGAGAGTATTCTGGACACAAGATGAAGGGCTATAAGCTGGACTGCTGCCTGTCGAGTAAAGACACCCACGTTCTGAGCTGCTCAGAAGACGGACACGTCTATTTCTGGGACCTGGTGGAAGGATCTTTGTCTTTGAAACTGCCAGTGGGGAAAGCTGTCGTCCAGTCGTTGTCCTTCCACCCCACAGAGACCTGCCTCATCACAGCCATGGAGGGGCGCGTCCAGGTGTGGGGGGCAGAGCCCGAGGAGACGGAGGAGGATGCAGCGGCCACATAGAGAATGGTGAAAGTAGTCCAAAGCCACATTTGCATGctgagaagatttttttttttttttcttctctttttccaaTAACAGTCTGTAAACCTCATCATTTTAAAACCTGATACAACTTATGGTGGCATGATAGCATCTTACTTCCACATTTAGTTTCTTGTGTCTGTAAACACAGGGTTAGGttggaaaaaggaaaaatcgCAAAACATGAAACTGAATCACAAAGCATCAAAGGCTCATGTGGACGGCTTAACTTGAATAAGATCCAAACTgggggtaaaaaaaataaatccacttTGGTCAGAAGTGAGCTACATAGATACACCGTTGATGTCAGGTGCAGCTAACTTCTTAGCCAGATTATCTGTCTTTATGGCTGTTAGCTTTCCAAAGATTTAGCTCTCTGGAGAAGGGAAGCAAATGCTAAACACATACCAGCTGACACAAATAGTGCAAAGTCCACAGATGTAGAGTTCATGATCTGGATGTAAATCTAATTTTAGTTTATGAATGAATCATAACAGTTAACTAAATGATCTAGGActtggatttttgtgtgtgtgaaaacataTATTTTTGTACAAAACCTTGAATAAACGTTTTCTTGTATAAATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4872 lncRNA downstream 22015 10624780 ~ 10625062 (-) True G3493
XR_005639334.1 lncRNA downstream 434202 10211424 ~ 10212875 (-) True LOC120559609
TU4768 lncRNA downstream 436671 10208999 ~ 10210406 (-) False LOC120559237
TU4806 lncRNA downstream 486268 10159224 ~ 10160809 (-) True G3439
TU4791 lncRNA downstream 546679 10099057 ~ 10100398 (-) True G3424
TU4877 lncRNA upstream 2270 10657336 ~ 10662561 (-) True G3498
TU4944 lncRNA upstream 178504 10833570 ~ 10833876 (-) True G3557
TU4953 lncRNA upstream 223625 10878691 ~ 10878890 (-) True G3566
TU4968 lncRNA upstream 228081 10883147 ~ 10883412 (-) True G3580
TU4969 lncRNA upstream 230764 10885830 ~ 10886075 (-) True G3581
XM_039814773.1 mRNA downstream 15350 10625324 ~ 10631727 (-) True ccdc130
XM_039814729.1 mRNA downstream 23062 10579285 ~ 10624015 (-) True LOC120567745
XM_039814745.1 mRNA downstream 75307 10497323 ~ 10571770 (-) True LOC120567750
XM_039814756.1 mRNA downstream 91109 10497325 ~ 10555968 (-) False LOC120567750
XM_039814763.1 mRNA downstream 93182 10497325 ~ 10553895 (-) False LOC120567750
XM_039816137.1 mRNA upstream 269605 10924671 ~ 10926308 (-) True ier2b
XM_039819663.1 mRNA upstream 316963 10972029 ~ 10993151 (-) False nacc1b
XM_039819738.1 mRNA upstream 316963 10972029 ~ 10992976 (-) False nacc1b
XM_039819794.1 mRNA upstream 316963 10972029 ~ 10992767 (-) False nacc1b
XM_039819611.1 mRNA upstream 316963 10972029 ~ 10992767 (-) True nacc1b
TU4721 other downstream 605073 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 1079849 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 1097179 9525543 ~ 9549898 (-) False G3312
TU4231 other downstream 1738991 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 1879104 8758649 ~ 8767973 (-) True G2938
TU4974 other upstream 244492 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 322577 10977643 ~ 10993201 (-) False nacc1b
TU5319 other upstream 1987206 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 2205218 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 2206628 12861694 ~ 12861765 (-) True trnac-gca_1

Expression Profile