RNA id: XM_039814756.1


Basic Information

Item Value
RNA id XM_039814756.1
length 4675
RNA type mRNA
GC content 0.53
exon number 35
gene id LOC120567750
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10497323 ~ 10571770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGGGAAATGGACAGTGACTGCAAAGTTTGACCACAGGCAGCAGAACACATTCACCTCCCCGTTCGAGGTGAAGAAATACGGTACCTGTATGGGGAGCCGGTCCAGGGGACGGCCTATGTGGTGTTTGGAGTGACGATCAACCAAGAGATGAGAAGGCTGCCTTCAGTGAAGCAGGTGTTGGATCTGGATGAAGGAGTGATCCATCTGAGCATGGAGGAGATCAAGAGAGCTTACCCCGATGTTAGATCTTTGGTGGGCAACTCTGTGTATGTGAAGGCCTCTGTGCTCACCAAGTCAGGCAGTGATCTAGTTGAAGCAGAGAAGACTGGAATTAAAATTGTGGAGTCTCCGTACATTGTATCCTTCAAAGACATACCAAAGTACTTCAAGCCAGGCCTGCCCTTGGACTTTGCAATCCAGGTGAGCCACCATGATGGTTCCCCGGGCCGTAACATCCCGGTCAATGTGAAGCTGCAGGGCGTGTCCATGGTTGTCTCCACCAGCAACAGCAGGGTCACCATCAACATGCCCAGCTCTCAACAGCCACAAACTATTACTGCTGAGACCACGCAGGTGGACCTGAGACCAGATCAGCAGGCCAAGAAACAAATCACCGTTCAGCCGTACGTCACCTTTGACCCACGGCAACAGAACTACCTGTACATCTCCACAGGGACCACCACGGTGTCTGTAGATGACACACTGTCCCTGAAGCTGAACATCGTTCctgcagacaacacacacagacagtacatTAAACACATTACCTACCTGGTGCTGAATAAAGCCAAAATTATTGTCGCCGAGCGTGTAGATGTGACGGGGCAGCTGGTCACCGGCGTCGGACTGAAGGTTACCCCGGAGATGATGCCATCGTTCCGTTTTGTGGCGTTCTACAGTATTCCCTGGGCGGGGATGGAGGAGGTGGTGCCAGACTCTATCTGGGTAGATGTGGCAGATTCCTGTGTTGGAGGACTGAAACTCGGGCCGGTGAGAGGCACACGTCGAGATTACACGCCTGGAAAGAACTTTAATTTTAAGATCAGAGGCGATCCGGGGGCAAAGGTCAGCCTGGTGGCTGTGGACAACGCTGTGTATCTTCTCAACAGGGACAGACTTACACAGAGgaagATTTGGGGTGCTGTGGAGCAGGGAGACATCGGCTGCTCCCGAGGGGGTGGCAGAGATGCCAAGGCGGTGTTCTCAGAAGCAGGGCTGCTCTACGCCTCCAGCGCCGGGTTTCAAACCACAACCAGACAAGCCCTGCAGTGTCCAGGCAGTGCCAGAAGGAGGCGCTCTGCTGAACAGTTGCAGCGTAAAGCCAGGCTGGAGAGTCATTACAAGGAGAAGCTGCAGCGTCGCTGCTGTATGGACGGCCTCAGGGGGATCCCCATGCCGTACTCCTGTACGCGACGCTCCCTCTACATCACAGAGGGCTGGGAGTGCATGAAAGCCTTCAGATACTGCTGCGCCACTTACAGGGACCAAGAGTTTAACACCCAGATTCCCACCACCCCACCACCCTTTACAACAACTCCCCCTACCACCTCCCCTCCACCCTTGCCCACTTTATTCCATGGTTTTAGAATATACTGGCCCGAGCCCACGTATATCAGTGAGGCAGTACATGTGGCGATGCCGGAGGGTATCGACTGGGTGCCAGAGGGggcggaggaagaggaggaggaggaggaggaggaggaggagtatcTGGATGCAACTCAAGTGTATGTGCGATCCAAGTTCTACGAGTCTTGGCTGTGGACGGATGTTAACCTTCCCAGCCAGGCAGACAGAGACGGGTTAGCGTCTAAGAATGTGGACAACCCCTTACCTGACAGCATCACAGAGTGGGGAGTTCTGGCCATCAGTGCATCACCTCATACAGGTTTCTGTGTCGCTGAACCTTACAACGTCAGAGCATGGAAGCCTTTCTTTGTGGACCTGAAGCTGCCGTATTCAGTGGCGAGGAACGAGCAGGTCGAGATTAAAGCTGTGGTCCATAACTACGAGGACAACGACCTGCATGTGAGGGTGGTGCTGATGAAAACAGTAGGCATGTGCAGCATTGCCTTTAAGAAGAGTCACACACAGGAAGTGACGCTGCCGGCCGGCTCTTCTGTCGCGGTGCCTTACACCATCGTACCGCTGGTGGTGGGGAAACTTCCTCTGGAGGTGATGGTGGTGGCCAGAGGTACGACGGCAGGAGACCGCATCCAGAAACAGCTACGTGTGGTGCTGGAGGGAGTGCAGAAGGCTGAAGTTCGGAGTGCAGTGTTGAACCCTGAGGGAGGAACACAGATGGTTCGGGTGGGCAAGATCGAACTCAAGTCAGTTGTGCCGAACTCTCGACCAGAGACATTCATCAATGTCAGAGGCAATGTGTTGGCAGACAGCATTGATAACTCCATCAGTGAGGACTCTCTAGCCTCCCTGATTCAGATGCCCGGCGGCTGTGTGGAGCAGAACTTGGCAAGCATCACGCTGCCGCTCATCGCCAACCTCTACCTGGATCAAACCAACAGCTGGGAGAGTGTAGGGGTGCAGCGCAAGGCTGAGGCTCTCCGGTTCATCAGGAGAGGCTACGAGAACCAGCTGGCATACAGAAAAAGTGATGGCTCTTACCCCCCCTACAGGAGGCAAGGCGCAAGTACATGGATCACGGCGTATGTGGTGAAAGTTTTCTCCATGGCTTACTCCATCACTGGCATCGACGAGCAGCAAGTGTGTGAACCTCTGCTCTACCTGGTGAACAACAAACACCAGCTTTTGAGAGGGAGCTTCAGAGAGGACAACCCAGTTTACACCACTACAATGACTGGCGGTCTCCGTGGTGACGACCCCGAGACAACGCTGACAGCCTTTGTCCTCATAGCGCTCGCCGAGGCCAAGCAGGCTGGGATCCGCTGCACTGGTCCAAGCGTAGAGGTAGCTGTAGGTAAGACAACTGAATACCTGAAGAGGGCGTTGTTGACGACGGGGAGGAGGCCGTACACTGTGGCCATCGCCTCGTACGCGCTGGCTCTGCTGGGGAATGCTTCGCCCTACAACCCGACACAATCTTTACTCAGAGCTGCAGCTCCAGaTGGCAGCCACTGGCCCGACAGTCAGAACACCTTGTTCACCCTGGAAGCGACCGGCTATGCCTTGCTAGCTCTGGTGAAGTTGGGGCGCATGGAGGAAGCTGCAGCGCCGTTTAAATGGCTGAAcggccagaggaggagaggaggaggcttCGGCTCCACTCAGTCCACCATGGTGGTGCTCCAGGCGCTGTCCGCGTACctgataaacaaacctgctCCCGAAGACGTCCATCTGGATGTGGATGTCAGGATAACAGGGCGTAAAGAAATCCGCTACCATTTCAACCCCGTGAACGCCTACGCCGCTCGCTCTTCCAGGTTGCCTGCTGATCTTGATTTGGAAGTGCAGGCTCGAGGGAATGGACAGGGAATACTGGAGGTTGTGACCCATTACAACCAGCTGCCAGAGGTGGATGAGAAGATCTCCTGCAAGGACTTTGAGTTTAGCGTCACTATCGAAGAATCCAGCGAAAAGCCTCCAGCAGATGTGGAGAAATCCTACCAGCTCACCATCAAAGTGAGGGCTTTAGGACCCAGAGATGTCCGGATGGTGATTCTGGATATAAATCTGCCCACCGGCTTCACCCCAGAAAACTCCGACCTGGAGATGTTGTCAAACTCAGTGGATCGTTACATCAATAACTTCCAGATTGTTGATAACCTGAGTGACAGAGGCTCTCTGATCATCCACCTGTTCACGGTGTCTCACAAAGAGCCAGAGATCCTGATCTTCAGGCTTCAGCAGAGCTTTAAAGTCGGCCTCCTCCAGCCATCCTCGGTTACTGTCTACGAGTATTACAACCCAGatcaCCGCTGCAGTCGCACCTACACTCCCAGAGAGGACAAAGAGGCGCTCACTCAGATCTGCCGGGACAACGTCTGCCGCTGCACGCAGGGTGACTGCTGTGTCTCCAAAACAGACAGTGAAAACTTCCTCAATAAAGACAGAGAGGTGTTTGCCTGCAATACTTTACACCACGTTTTCAAGGTGAAGGTGCTGAATGTCAGCCAGAGTTACTACGACAAATACGAGATGGAGATCACGCGAGTTATCAAGCTGGGTGTGGAGGCAGGAGTCGAGGTGGGTCAGAAGAGGTTCTTCATGTCTCACGGAGGCTGCAGGGATGGAATCAACCTGAAGCAGGGCTCTGAGTACCTCATCATGGGCCCCAAAGAGGACCAGTGGAACGTTGATAGTGACGCCAACAGATCCATCTACATGCTGGGAAAGGACACCTGGGTGGAACGCTGGCCTACGTCTGCAGAGTGCTCCAGCATGCAAGCTAAATGCAAGAGCCTGGAAGATACTGCAGATGAACTGTCTGTCAACGCCTGCAGGGTGTAGAGGCGCCGCAACTGCACACCTTTATCCTGTGATGTTTTGTTGCAAAGATGTCAaataactgttcacacaaacatttaatgatcattttagggTTAAAGCCAGAGTAATAATGACATTGTGTTTTCACTGTAGAAAAAAGAACTGAAGTGGAGTTTGTTATAACAACATACCCAACAGGTTTATCTTTACTGTAATGATATAAGAATGAGAAAGAAATAAACATCACTAATAAAAGAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639334.1 lncRNA downstream 284450 10211424 ~ 10212875 (-) True LOC120559609
TU4768 lncRNA downstream 286919 10208999 ~ 10210406 (-) False LOC120559237
TU4806 lncRNA downstream 336516 10159224 ~ 10160809 (-) True G3439
TU4791 lncRNA downstream 396927 10099057 ~ 10100398 (-) True G3424
TU4787 lncRNA downstream 398063 10088618 ~ 10099262 (-) True G3421
TU4872 lncRNA upstream 68812 10624780 ~ 10625062 (-) True G3493
TU4877 lncRNA upstream 101368 10657336 ~ 10662561 (-) True G3498
TU4944 lncRNA upstream 277602 10833570 ~ 10833876 (-) True G3557
TU4953 lncRNA upstream 322723 10878691 ~ 10878890 (-) True G3566
TU4968 lncRNA upstream 327179 10883147 ~ 10883412 (-) True G3580
XM_039800800.1 mRNA downstream 286021 9858080 ~ 10211304 (-) True LOC120559237
XM_039811752.1 mRNA downstream 315338 10172085 ~ 10181987 (-) True LOC120565745
XM_039801275.1 mRNA downstream 909359 9578442 ~ 9587966 (-) True atpv0e2
XM_039800923.1 mRNA downstream 930078 9525261 ~ 9567247 (-) True LOC120559295
XM_039814729.1 mRNA upstream 23317 10579285 ~ 10624015 (-) True LOC120567745
XM_039814773.1 mRNA upstream 69356 10625324 ~ 10631727 (-) True ccdc130
XM_039803590.1 mRNA upstream 91109 10647077 ~ 10655066 (-) False wdr83
XM_039803581.1 mRNA upstream 91109 10647077 ~ 10655066 (-) True wdr83
XM_039816137.1 mRNA upstream 368703 10924671 ~ 10926308 (-) True ier2b
TU4721 other downstream 455321 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 930097 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 947427 9525543 ~ 9549898 (-) False G3312
TU4231 other downstream 1589239 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 1729352 8758649 ~ 8767973 (-) True G2938
TU4974 other upstream 343590 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 421675 10977643 ~ 10993201 (-) False nacc1b
TU5319 other upstream 2086304 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 2304316 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 2305726 12861694 ~ 12861765 (-) True trnac-gca_1

Expression Profile