RNA id: XM_039811752.1


Basic Information

Item Value
RNA id XM_039811752.1
length 2292
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120565745
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10172085 ~ 10181987 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCTTATCAAGACAACTCGCTTTCACATTAAGTTTCTTATGTGACTGACTTGATACATATGTACATTATTTACCTGCAGGcatgttttattatttctgaACTTACACACAGAGAAATGAGAGGAGCAGCTTGGAGTGGATTGGTCGTCCTTCTCTTCACTGTACCAGTGATACAGAGTCAGAATGGCTGGGGAGTGACTTACACCTCTACTCAGATCTGTGCCTTAAAGGGATCAACAGTGGAAATACGCTGCAGCTACAGATACCCATCCACCATTGTTGGTGGAGTAAAGGAAACATTCTGGTTTACAAAAGAGAGTAATAATGTTTACGTGGATCTGACAACGGACCCAGAGTATTCAGGTCGTGTGCAGTATCACTCTGAAAACAAGGACTGCACTCTGAGAATCtcagacctgagagagagagactcagctGAGTACAAGTTCAGGTTCGCAACAAACCAAGATGGGAAATATACTGGTTATCCTGGAGTCACTCTGTCGGTCACAGGTCTCCAGGTGCAGATTAGTGGATTCTACACGTCCTCTAACAAGGCAGATCTGAAGTGTCAGAGCAGTTGTCCTCTACCTGGTCATCCTTCCTACATCTGGTACAAGAATGGACAGGACATTCAGGGACAAACATCTGATTCGTATTCAGCCTCCTTGGATCCTGCAGACAGCTTTTCCTGTGCTGTAAGAGGACATGAGAACTCCCGCTCTCCTTCAGTGTATCCACAGCTCCAGGTACATGTGAGGAGATCAACAGTCAGATCCCACCAACAGCCTACCTGGACAGAACTGACATGTCATAACAAGTGTCAGCTGCCTGATCATTACTCCTACATCTGGTACAAGAACGGACAGAAATTTGGAGATAAAAAAGTTTACTTTCATCTAGACCTATTTAATCCTGCAGACAACTATTCTTGTGCTGTATCAGGATACGAGATGTTCCCCTCTCCTTCAGTGTATGCTCCAAAGCGtccctctgtgtcagtgagtccTTCTGGTGATTTAATGGAGGGAAGTTCAGTAAATGTGACTTGTAAcagtgatgctaacccagcagctaACTACAGCTGGTACAAGAATAATCTAGTTTCCGAACGCCTCAGTGAAGGACCACAGCTCATCTTCAGCTCCATCCAGTCCTCTGACTCTGGACAGTATTACTGTACAGCTGAGAACAAGCTGGGGAGGACATCAGCAAACATCTCTATTAATGTCAAATATGCTCCAAAGcttccctctgtgtcaATGGTCCAAAGGAtccctctgtgtcacagtgatgctaacccagcagctaGATACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTAGCAGATAAATCAACAATAACACTGATAACAAACAGCATCAGGTTGACTctggtgggggttggggggctgattcctctgcttcttttttgtcgGAGGATGAGGAAGAAGAAAGCTCTGAGCTCCACCACTGAACCAAATGAACCCATAGAGACTgtggagACTCTTGTCCTGAGTATGAGGAAATCTCAGAGACTGCAGCACAAACAGAAGACCCAGAGGAGCAGGAAGACCTGGTGTGAAGCCAAACCAGAGGGAGACTCACAtggaggaaaacaaaaagaagtCTTTAACTCCAAACGTTTTCACTCTCAGTTTTTTAGAAGCAGCAGGTAGCAGAAGATCAGAgaagaatgcagctttatttgtacctGTGCAGGTACATAACAGAACTGAACTCAGTTCAGGATTTGACTTGGTAAGCCAGTAAAGTCCAACTATTCCACAGCATGTACAGCAGATCTTACATGGTATATTTTTACACATTGAAAAACATGAGCTCAGCTCTGCCAAACTTTGCTAGTTGTTCATTTGTATTGAatgaattgtattgtattgcatGTATTGTAGTGTGAACATCATGCCAGTtccctctcactgctgcagagggCGATAGAGTTCAGGTGCAAGCTTTTGATTTCAGCTTTAAACAAACTCTTTTTGTGTTCATTCTTCAGAATGAAGATTTTATTGATCAGTAATGAGTGCACATAAAATTTAAATCAGTTGGTATGCTCTGACGTATTTCTCACTTGCCCAATGTTGTCCATCTGTAAAACTTGTCACAGTATAATAAACGTTTACTCTGGTGAACAACCTAAAACAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4806 lncRNA downstream 11276 10159224 ~ 10160809 (-) True G3439
TU4791 lncRNA downstream 71687 10099057 ~ 10100398 (-) True G3424
TU4787 lncRNA downstream 72823 10088618 ~ 10099262 (-) True G3421
XR_005639322.1 lncRNA downstream 98257 10073101 ~ 10073828 (-) True LOC120559577
TU4784 lncRNA downstream 99112 10072326 ~ 10072973 (-) True G3418
TU4768 lncRNA upstream 27012 10208999 ~ 10210406 (-) False LOC120559237
XR_005639334.1 lncRNA upstream 29437 10211424 ~ 10212875 (-) True LOC120559609
TU4872 lncRNA upstream 442793 10624780 ~ 10625062 (-) True G3493
TU4877 lncRNA upstream 475349 10657336 ~ 10662561 (-) True G3498
TU4944 lncRNA upstream 651583 10833570 ~ 10833876 (-) True G3557
XM_039801275.1 mRNA downstream 584119 9578442 ~ 9587966 (-) True atpv0e2
XM_039800956.1 mRNA downstream 604838 9525261 ~ 9567247 (-) False LOC120559295
XM_039814745.1 mRNA upstream 315336 10497323 ~ 10571770 (-) True LOC120567750
XM_039814756.1 mRNA upstream 315338 10497325 ~ 10555968 (-) False LOC120567750
XM_039814763.1 mRNA upstream 315338 10497325 ~ 10553895 (-) False LOC120567750
XM_039814729.1 mRNA upstream 397298 10579285 ~ 10624015 (-) True LOC120567745
XM_039814773.1 mRNA upstream 443337 10625324 ~ 10631727 (-) True ccdc130
TU4721 other downstream 130081 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 604857 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 622187 9525543 ~ 9549898 (-) False G3312
TU4231 other downstream 1263999 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 1404112 8758649 ~ 8767973 (-) True G2938
TU4974 other upstream 717571 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 795656 10977643 ~ 10993201 (-) False nacc1b
TU5319 other upstream 2460285 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 2678297 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 2679707 12861694 ~ 12861765 (-) True trnac-gca_1

Expression Profile