RNA id: XM_039801275.1


Basic Information

Item Value
RNA id XM_039801275.1
length 1040
RNA type mRNA
GC content 0.44
exon number 4
gene id atpv0e2
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9578442 ~ 9587966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGTGGAAGCGACTGGCTGGCTCAGCAGCCATTGATGCGCTTTATTTTCCAAGAGGACAAACCGACATTAATTCTTCCATATTTTTGGTTTTCTGTGAGCCGGAGCCATGGTTTCTCACTCTCTCGCCCTGCCCATGATCTGCTTCACCACGCTGTGGGCCCTGGTGGGCGTCGTGGCTCCGTTTCTAGTGCCTAAAGGACCCAACCGGGGTGTGATTGTCACCAGTCTCATCCTCACAGCGGTCTGCTGTTACTTGTTTTGGTTGATAGCCATTCTGGCCCAAGCCAACCCTCTGTTTGGCCCTCAGCTGAAGAATGAAACTATATGGTATCTGCGCTACTTCTGGGAGTAAACAAGGACTGTGTGACGTGCTGCCTCTCTTCATTCCTGTCTCGTGGTTGGCTGgactttatttcaaaataacTCCTAACCGTTCAacatcccccccccacacacacacacacacacacacacacaatctgcaGACTTAATGAAAAAGTCGGTTTTCTTTGCAACCTTTGGAAATATTTACAATTATGTACAGTACCTGGAATTGAAGATTTAGAGTGTATTAAGACACATGTTGTGGGTTTTAAAACAAGGAGAAGAATACATCTTGTGACCCAGATACAACGCAACGCGAACAAATCAGAGGAAAGCATTGagtgggttttatttttatttatttttttactggtCCAAATGATTTCCAGTGAAACCGTTGTCATCTGTTAGGAGTAGATATTAATCTTCTGTCTGTGAAATGTGCAATCTTTTGGTACTTTAGTTTAATTTGCGTTGGTTTACATTTCTGTGTCACCGCCATCAGGGAACATTCATTTCtcagtatttgtatttattttgaccAACGGACACTGATGTAAGCGCGTCGTAATTTACCTCAGTGTCCACACGGTCTTGTTATATAACTGTTATTATCTGTGATGTAAtggtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagagttcATTACTGTGAGTGCTTGGGCCGCGGCCATGAGAATCTCC

Function

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02153 ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4637 lncRNA downstream 52054 9508604 ~ 9526388 (-) False G3312
TU4631 lncRNA downstream 81659 9407671 ~ 9496783 (-) True G3309
TU4661 lncRNA downstream 83956 9493794 ~ 9494486 (-) True G3331
XR_005639308.1 lncRNA downstream 102427 9474686 ~ 9476015 (-) True LOC120559537
TU4642 lncRNA downstream 102431 9474694 ~ 9476011 (-) False LOC120559537
TU4678 lncRNA upstream 51075 9639041 ~ 9652295 (-) True G3346
TU4680 lncRNA upstream 51075 9639041 ~ 9640273 (-) False G3346
TU4693 lncRNA upstream 59639 9647605 ~ 9683644 (-) True G3352
TU4687 lncRNA upstream 65817 9653783 ~ 9696009 (-) True G3348
TU4703 lncRNA upstream 105358 9693324 ~ 9824263 (-) True G3360
XM_039800965.1 mRNA downstream 10597 9525261 ~ 9567845 (-) False LOC120559295
XM_039800931.1 mRNA downstream 10597 9525261 ~ 9567845 (-) False LOC120559295
XM_039800973.1 mRNA downstream 11195 9525261 ~ 9567247 (-) False LOC120559295
XM_039800939.1 mRNA downstream 11195 9525261 ~ 9567247 (-) False LOC120559295
XM_039800956.1 mRNA downstream 11195 9525261 ~ 9567247 (-) False LOC120559295
XM_039800800.1 mRNA upstream 270114 9858080 ~ 10211304 (-) True LOC120559237
XM_039811752.1 mRNA upstream 584119 10172085 ~ 10181987 (-) True LOC120565745
XM_039814745.1 mRNA upstream 909357 10497323 ~ 10571770 (-) True LOC120567750
XM_039814756.1 mRNA upstream 909359 10497325 ~ 10555968 (-) False LOC120567750
XM_039814763.1 mRNA upstream 909359 10497325 ~ 10553895 (-) False LOC120567750
TU4646 other downstream 11214 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 28544 9525543 ~ 9549898 (-) False G3312
TU4231 other downstream 670356 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 810469 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 1077301 8483712 ~ 8501141 (-) False wipf2a
TU4721 other upstream 438304 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 1311592 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1389677 10977643 ~ 10993201 (-) False nacc1b
TU5319 other upstream 3054306 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 3272318 12860284 ~ 12860355 (-) True trnac-gca

Expression Profile