RNA id: XM_039800939.1


Basic Information

Item Value
RNA id XM_039800939.1
length 3859
RNA type mRNA
GC content 0.55
exon number 10
gene id LOC120559295
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9525261 ~ 9567845 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttaacAGTCCTACAACCATCTTTTCTGTCCCGTTTTATCCGCCATATAGGCAGGCTCGCGACTGCTGTAAACTAACTTCCTGCATGTAGCCGTATCGGTGAAAATGGGATTTTACGGCTGAGCGGCCGCTGCTGTCCACGCGGGGCTCTTCTCGTGCGTGTTGTGGATGGTGCTTATTAATAATCTCATCTGGAGAGGCCGAGGCCGACATTTTACCCCGGTCCGGAGGAGCCTTTAAACCCGAGGGGGGGACCATCCGAGGACGCGCGGCTGGGAGGGCTGAGAGCTGCAGGGCCGCGACATGTGAAAGGAGCTCCACGCCTTGACCCTCTCAACTCTTGACCTTCGCAGAACTCACTTGAACCGACGTTGTGACCGCGACCTGACACCATCCTGCCTCGGGCATGCCTCAGCCGGGTATGAATGGGATGGAGCCTGCGTTTGGCGAGGCCTACGGGGGACACAGGGGTCTGCTGAGCCCCTACCCTCTGGCCATGTCGCCACAAGGGGGCAGGACCGAGTACGACCAGAGCGTGCTCCTCATGCTGGGCTCCCCGGCGTCGCCAAGGAAACGGCCCTTTGAGTTGCTAAGCGACCTGGTGGACGACGGCGGCTTCGGCGAGGACCTGCACCCGGAGCGCTGGGACGTGTCGGCGCTGGACGAGATGGCTCGCTACACCAAGCTGGGCCTCGGGGTGGGCGGGGAGCTGCTGGCCGGCTCCGAGGAGGCCGTCCTGATGGGCCGCTGGGGGCGGAGCCGGGAGGagcaggagcaggaggaggaagaggagaggcgGAGGAGGAACCGGCCCGCGGCGCCCCCCGTCGCCCAGGAAGTCCAGGCCACTGCCGCAGGGAGGCAGGAGGGCCGCGCCTCGGTCGCCACCACACCCGAGAGGGAGTTGTGTGTTGCGGGAAGAGCGGCTGGCGGGGGGGCGCCGAGGCAGCGCACGGTGGAGGTGTACCAGGTGgcgcaggaggaagaggaggaggtggcgCCGGCGCCGGCCGGTTTGGCTCTGGAGCACTGCAGCGAGGAGCACAACTACTCCCTGAGCCAGGGAGAGGAGCTGGGGGCTCACAGCGCCCAGACAGAGGGGGCGCGGGTGGGGGAGGCGCAGCaggaggtggtggtgggtgggggggaCGGCCAGGCCAAGACTGAGCTAGATCTGGAGGACGAGGACCAGGGGCAggacgaagaggaggaagaggaagaagaagaagaggaggaggatgaggaggaggaggaggaggaggaggacgaaggagaggagggagcaGAGGAGACGGCGGTGGAAGCTGAACTCTCCAGCTCCTCTGAAACTGAATGTGAGGTGGAGGCCGAGCCAGCGAGGCAGCCGGGGGAGCGCCCGTCGAAGCGCCGCTGTTTCTGGGAGTACCGATGCGCTCGAGAATCGGCCACGAAGAAGAAACTGGCCGGAGACGtccactggtctctgtcctggagCTCCAGCACTCTACCCAGCACACTGTACCGCCGAGAGGGCAAAAAAGGGCGACGCAAAGCTCGCAAGACGGACGCCAGCGACCTGACGCCAAACCCCCAGAAGCTCCACAACATCGGCGAGCAGCTGCAGAAGCTCAACGCTGCCATCGACGGCATGGGCCCGGTCAACGACCTGCCCGCCGTGGCCCGAGCCCGGTCTCGCAAGGAGAAGAACAAGCTGGCCTCCAGGGCCTGCCGGCTGAAGAAGAAGGCCCAGCACGAAGCCAACAAGATCAAGCTGTGGGGGCTCAACCAGGAGTATGAGAACCTGCTGGGAGCGCTGCTGCGGATCAAGGAGGTGATCCGACTGCGGGTGGAGAGCAGCGGGGAGGAGGACACGGACGAGCGAGGGATGACCCAGCGCCTGGAAGACATCCTCCGAGACTCCAGCgGTCCTTTAGTTGCCGGGCGGACCAAAGACTTTGTACAGAGGATTTTGGCAGCCAGTGCGGGCGGCCAGCGCGGGCGCAAAGAGGGGGATGAGGCGGCGGGTTAAACAAAACTCTCCCAGCATCctaccttcctcctcctcctcctcctcctccctctttccaCCCCTTCCCCTCCCAGCACCAACAAAGCAACCTGACCTGACCAAGCTTCTCTGCACCGCCTCCACTCCCACCATGTACACATTTCGAGTAGGAGCGAAGAGATGAAGAGGTGGAAATGCTTGggggagaaagaagaagaaggaggaggaggaagaaataGCCTAAACAAAATGGGAGTAAATTGCCACCGTGctcctggtcctctcctctccaaaaCAGTGGCCGTCTTCACCGCTCTGTCTCTGCAGGCTGCACCACAACCACCACGAGgccagagctgctgctgctgacgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacatgtaaCATACTGTATGGGTGTATAGtgttcctctctccctctgtgtgctGTATTCGTACCCCAGTGTGCCTATGAATAGACATTGCACTGTTTTTGTAGATGGTCGTAGTTGTCGGCAGGGCCGGTAGTGAGGCGAGGGCGAGAGGGCATTTGAGGATAGAGgaagtgctaaaaaaaaaaataaggaagtGGGAGGAGCCCCAGGCCTGGAAGACAAAGAAGTGGGCgtgtgctttttttatttttatttggctGGGCTCCTATAGAAGCGCTGCATACCATTCGGATTGCATCggcatctaaaaaaaataataacaaaaaggtCCTGATGCCGGACCAGCTGTTAATGGAAACAACAGCGCATTCGttttggacaaaaaaaaccaacctTTAATAACCCTCCCATCCACCCTCTTTAACTCCCACTTCACCCCATCAAAATGTAagcaaagttttaaaaaaaagaaaagaaaagaaagatagAGAAAACTGCACCTTAATTCAAACTGACCAAAGATACTGCTGAACCACTCAGACACCAAAAGCTCTCACTGCTCCAGATGCTGCCAACCATTAACACATCGTTCTGTTTTGTGAAATATTCTCATTGTTGTCATGTTTACCCGCATGCATCTTCAGAGGATGGACTTTTAATCCCCTTCGCCTAAATGCACTACTGTCACGGACCTGAGAGGCCGTGgtgtaacagacagacagacagacagacagacaggaaatgaCTGTCAGTTTCTGATTTCGTCGGCTTTTCCGCTCGGCAGCCTGGGGTGCTCCTTTTTAGCTTCTCTGCGGCGGCTTTATTTtgatccacaaaaaaaaaaaaagggaagtgtCCTCAATAACTTCCCTCAAGCCCTCTCCTCAACCCCTGACCGGATTATGTAGCGCACCTTCCTGAATTGCAATGacaaatagagaaaaaaaaaaatattgtagaTCTAGAAAGCaaatatgttttaatttgttttttattatgattatttttcTTGTTATTTGGCAATGCCACCACAGCCCACATAGTGGGTGTCTTGAGAGTTTTTTGAAATTTGCCTTTCTTCTGTGGTCTTTGCTGACGCTGTAGTCCAACCTTGTCCAAGGTCTCTAAATGTTGTTggacgttaaaaaaaaaaaaaaaaaaaaaaaaagtccccttGACCCTTTGAATTGCACTGTGGTAAGAGCAACTAAGCACCTTCAAAGAGGGCTTCAGatcctccaaaaaaaaaaaaaaaaaagctaataaaaaaaaaaggctcttgGCACCTTTTGTCTAAAGACAGATTGTTTGAGAGGCTTGTTGTGGGCGCTTAGCGCTTTGTTACCGAGCGGTCTCGGTTTGTTTCAGTATGGTGCTACTGtatgatgaaaacaaaaaaagaaaatgagaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4631 lncRNA downstream 28478 9407671 ~ 9496783 (-) True G3309
TU4661 lncRNA downstream 30775 9493794 ~ 9494486 (-) True G3331
XR_005639308.1 lncRNA downstream 49246 9474686 ~ 9476015 (-) True LOC120559537
TU4642 lncRNA downstream 49250 9474694 ~ 9476011 (-) False LOC120559537
TU4643 lncRNA downstream 49250 9474694 ~ 9476011 (-) False LOC120559537
TU4634 lncRNA upstream 7656 9574903 ~ 9587986 (-) True G3312
TU4636 lncRNA upstream 7656 9574903 ~ 9640514 (-) False G3312
TU4678 lncRNA upstream 71794 9639041 ~ 9652295 (-) True G3346
TU4680 lncRNA upstream 71794 9639041 ~ 9640273 (-) False G3346
TU4693 lncRNA upstream 80358 9647605 ~ 9683644 (-) True G3352
XM_039801126.1 mRNA downstream 35521 9477680 ~ 9489740 (-) True LOC120559444
XM_039801132.1 mRNA downstream 35620 9477680 ~ 9489641 (-) False LOC120559444
XM_039801145.1 mRNA downstream 112904 9396830 ~ 9412357 (-) True LOC120559457
XM_039801172.1 mRNA downstream 193707 9304947 ~ 9331554 (-) True hoga1
XM_039800886.1 mRNA downstream 278356 9165988 ~ 9246905 (-) True lcor
XM_039801275.1 mRNA upstream 11195 9578442 ~ 9587966 (-) True atpv0e2
XM_039800800.1 mRNA upstream 290833 9858080 ~ 10211304 (-) True LOC120559237
XM_039811752.1 mRNA upstream 604838 10172085 ~ 10181987 (-) True LOC120565745
XM_039814745.1 mRNA upstream 930076 10497323 ~ 10571770 (-) True LOC120567750
XM_039814756.1 mRNA upstream 930078 10497325 ~ 10555968 (-) False LOC120567750
TU4231 other downstream 617175 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 757288 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 1024120 8483712 ~ 8501141 (-) False wipf2a
TU3972 other downstream 1315726 8207252 ~ 8209535 (-) False G2840
TU4721 other upstream 459023 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 1332311 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1410396 10977643 ~ 10993201 (-) False nacc1b
TU5319 other upstream 3075025 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 3293037 12860284 ~ 12860355 (-) True trnac-gca

Expression Profile