RNA id: XM_039806902.1


Basic Information

Item Value
RNA id XM_039806902.1
length 1850
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120562943
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7249581 ~ 7255345 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCATAAAGAAAATGTTGCCTTTCCTCTGACAGATCACTGCAGCAGCACCTTCCCTTCAAACACTGAGAAGAAAACCGACTTCAGAGCATCTGTCAGACATCTTTCTCCACCAAAGGCGTTGAAGCCACAAGATCTTGCTGGCAACAGACGCAAGGATGGCTGGTCTGTGCTGGTTGGCTGTGGTTCTGGCCTTCTTCATGTCTGACAGTTTGACTGCTATGGAACAGGACAGACTTGCAAGTATCATTCAAGGCATCAAGAATGAGTATGACCTCGGTGACACCTTCAGTCTGGCTGTGAACATCCCACAGGACCAAGACATAAATGATCTCCAGCAAGTTTTTCAGGATGACCCAGCAGACAAAGTGAAACAAACAGTTTCAGAGGGTCAAGTGTACCAGGGCACCCGGGTGGTGGCAGCAGCACAACCAGAGGCACTGTCACGTGTTCTAGGAAACCTACAACCCTTATTTAAACGCAGTAAAGGTCATTTTCTCCTCATCTACTCGGAAGAATCCCCATGTGGTCCGACGTGTACAACAAATGAAAATAAGGACAGGATCACTGGCAAGATTAACGAAATAATTCAGAACTGGGGAAGTTATGCATTTGTGTTTTCTAAAGTACACGATGTCCCTGGCGCAGACACGCCTCAGCTGGCTGAATCCTTTAAGCAACTTGGGGTTTCTAAACTTGGGCTTGACAAAGTATTCCGATGCTATAAACCTGACGATTCTTTTCAGTGCACCAGTTGCTTATCAGATGGAGATGTTACGCCCGCATGTGTTGCTAACGATGTCCAGTCTAATCAAGAGCAGGGGGTAGGCGGGGAAGAGGGTACAGTCCCTTcaacaggcacagacacaggcaAAGAAAAGGGTGAAGGCATGAGGGAAGATTCAAACACAGGAGAAGAAATGGCTGAAGGCACAGGCGAAGAAATAGCCACAGGCGAAGGTGGCGGAACAACAGGTggcaaagaaaagggaaaaggcGGACAAGTGAGCAAAGGACGTGGCAGTGGTAAAGTAGGCAATAAACCTGGCAAAGTTAAGTGTAAGGCAGGGGGCAAACGTGGAAAAGGTTGCAAGGTTAGGCGTATAGGAGGGGGAAAACGTGGTAAAGGTGGCAAGGTTGGGCGTAGGGGAGGCGGCAAACGTGGAAAAGGTGGCAAGGTTGGGCGTAGAGGAGGTGGCAAACGTGGAAAAGGTGGCAAGGTTAGGCGTAGAGGAGGCGGTAAACGTGGGGAAGAGGTGGCAAGGTTGGGCGTAGGGGAGGGGGCAAACGTGGAAAAGGTGGCAAGGTTGGGCGTAGGGGAGGCGGCAAACGTGGAAAAGGTGGCAAGGTTGGGCGTAGAGGAGGCAGCAAACGTGGAAAAGGTGGCAAGGTTGGGCGTGGAAGAGGCGGCAAACGTGGAAGAGGTGGCAAGGGTAAAAGACGAGGCAAACGTAGTGCAGAAGGTAATAGTGAGAGTGACGGGTAAGAGAAACAGGTATTGGGACTTGTTGCCCTGGGGCTGATTGGACTGCAATGATACAGCTAAAATAACTTCATAAGGACCTGAGAATCTGAGCAGCAACCCACTGAAGCTCACTGAGAAAAAAAGTGCCTTATGCCTAATAAAAATGTGCTTGTTTCTTTTACTTCCTCTAGATTTAATGACTGCCTTCTAAATTTTGTTAATGCCTGCGACTATAAAACACCTGAGTTATGGCACTGATACTGAATGGATCCATTTCTTTAAGATTTCAAAAGGATTCAGCTGATGgttttctatattttttgttgttgtcatcccatgaaattaacaaaaacaacagtgaaAGTATCTACTGACGTGTGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3358 lncRNA downstream 9453 7225340 ~ 7240128 (-) False commd1
TU3362 lncRNA downstream 81754 7166432 ~ 7167827 (-) True G2392
TU3308 lncRNA downstream 122172 7126802 ~ 7127409 (-) True G2367
TU3303 lncRNA downstream 163296 7085358 ~ 7086285 (-) True G2362
TU3300 lncRNA downstream 168113 7081247 ~ 7081468 (-) True G2360
XR_005640135.1 lncRNA upstream 8346 7263691 ~ 7268389 (-) True LOC120564702
XR_005640658.1 lncRNA upstream 16474 7271819 ~ 7276543 (-) True LOC120568064
XR_005640671.1 lncRNA upstream 178571 7433916 ~ 7441067 (-) True LOC120568185
TU3435 lncRNA upstream 181129 7436474 ~ 7438272 (-) True G2451
TU3815 lncRNA upstream 377029 7632374 ~ 7633344 (-) True G2743
XM_039812192.1 mRNA downstream 3168 7241820 ~ 7246413 (-) True LOC120565981
XM_039812275.1 mRNA downstream 3210 7241820 ~ 7246371 (-) False LOC120565981
XM_039812356.1 mRNA downstream 3216 7241820 ~ 7246365 (-) False LOC120565981
XM_039810387.1 mRNA downstream 9431 7228614 ~ 7240150 (-) False commd1
XM_039811094.1 mRNA downstream 25719 7158870 ~ 7223862 (-) True b3gnt2a
XM_039810574.1 mRNA upstream 37202 7292547 ~ 7307876 (-) True LOC120565143
XM_039817152.1 mRNA upstream 76611 7331956 ~ 7336645 (-) False LOC120569296
XM_039817140.1 mRNA upstream 77642 7332987 ~ 7372558 (-) False LOC120569296
XM_039817131.1 mRNA upstream 77642 7332987 ~ 7372558 (-) False LOC120569296
XM_039817123.1 mRNA upstream 77642 7332987 ~ 7336645 (-) False LOC120569296
TU3357 other downstream 9453 7225340 ~ 7240128 (-) True commd1
unassigned_transcript_11 other downstream 206563 7042947 ~ 7043018 (-) True trnae-uuc_9
unassigned_transcript_10 other downstream 207413 7042097 ~ 7042168 (-) True trnae-uuc_8
unassigned_transcript_9 other downstream 210028 7039482 ~ 7039553 (-) True trnae-uuc_7
unassigned_transcript_8 other downstream 210998 7038512 ~ 7038583 (-) True trnae-uuc_6
XR_005640861.1 other upstream 76611 7331956 ~ 7372558 (-) True LOC120569296
XR_005640913.1 other upstream 302422 7557767 ~ 7557898 (-) True LOC120569612
XR_005640903.1 other upstream 316976 7572321 ~ 7572457 (-) True LOC120569585
TU3830 other upstream 484479 7739824 ~ 7763948 (-) True G2752
TU3971 other upstream 951907 8207252 ~ 8209535 (-) False G2840

Expression Profile