RNA id: XM_039817131.1


Basic Information

Item Value
RNA id XM_039817131.1
length 1312
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC120569296
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7331956 ~ 7372558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAAGGAAACGAGCCATGATGACTCGTAGAACAGGTCCGTCCACCGCTTGAACTCATGATATATAAACTCAGATTTTCCTGTCTgaagacacaaaaaaagaaagaaaagagaagaagaaagaaacagtaatagaaacaaaGGATATTTTTACTCTACTtggaacatttgaaatTTTTTAGACTGACAAACCCTGTGAGCAACAATACTGAAGATGGCTGGCCTGTGTTGGATGGCTGTGGTGCTGGTCTTCAGCCTGTCTGTTGGAAACACTGGGACTATGACTCAGAATGAGGTCCAAGCAATTGTAAACTTCATCCTGAACAACAACACCTTGTCTCCAGACACAGAGGACGACAGCTTCAGAGACCTCATCGAACATCTTTCTCCTCCAGAAAAGGGAAGTTACACCTCCAAGGAACACCACAGAGCTGGGTTAAATCAACACCTTGTCTCCAGACACAGAGGACGACAGCTTCAGAGACCTCATCGAACATCTTTCTCCTCCAGAAAAGTTTTTAGACTGACAAACCCTTTGAGCAACAATCCTGAAGATGGCTGGCCTGTGTTGGATGGCTGTGGTGCTGGCCTTCAGCCTGTCTGTTGGAAACACTGGGGCTATGGATCAGAATAAGGTCCAGAAACTTGCAAAATACATCCTGAACAACTGCTTCCTAGGAGAAGGACAGGTCAGTTTGGCTGTAAACTTCCCAGCGAACCTGGACCAGAACAGTCTTCACAAGATCTCAGAAGAATGTGCACTTATAAAAGATAAGATCGGACAACAAGATGGACTGTACAAAGGTACCATTATGGTTGcagcaaaacataaaacaattcAATCAAAGAGTAGACAACCATATACTGAGCATGCAGAGGAACGAGTACTGGACAACATGCAACACTTAGCTGCCAATAGTGCGGGTAAAAGTCTGATCTTCTATTCTTTCCTTTCTCCATGCACCAAGTGTACAACGCAAGGCGGTCGTCATAATATCTTAGACAAGATTAAAgataaaattgacaaaaaaggaTGGAACGACATTGCCTTTGTGTTTTCCAAAGTATACACCAGGACCAAAAATTACAAGGGGGATGTTCCCTTATTTGAAGATACAATTAAAACCACCCTTGAAAATCTTGGAACAACTATATTTGATGACAACATATTTCATTGTTACTCCCCAAAAAGAAGTCCATTCAAATGCATCAAGTGCCTCAGCAATGCATCTCCAAGACATGTAGATGAAAACTGTCTTACAAACGAAGACGACCTgtatagctcagttggtagagtgggcgctcatatatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640658.1 lncRNA downstream 56444 7271819 ~ 7276543 (-) True LOC120568064
XR_005640135.1 lncRNA downstream 64598 7263691 ~ 7268389 (-) True LOC120564702
TU3358 lncRNA downstream 92859 7225340 ~ 7240128 (-) False commd1
TU3362 lncRNA downstream 165160 7166432 ~ 7167827 (-) True G2392
TU3308 lncRNA downstream 205578 7126802 ~ 7127409 (-) True G2367
XR_005640671.1 lncRNA upstream 61358 7433916 ~ 7441067 (-) True LOC120568185
TU3435 lncRNA upstream 63916 7436474 ~ 7438272 (-) True G2451
TU3815 lncRNA upstream 259816 7632374 ~ 7633344 (-) True G2743
TU3804 lncRNA upstream 269564 7642122 ~ 7662768 (-) True G2732
TU3805 lncRNA upstream 310346 7682904 ~ 7690535 (-) False akt3b
XM_039810574.1 mRNA downstream 25111 7292547 ~ 7307876 (-) True LOC120565143
XM_039806902.1 mRNA downstream 77642 7249581 ~ 7255345 (-) False LOC120562943
XM_039806912.1 mRNA downstream 77642 7249581 ~ 7255345 (-) False LOC120562943
XM_039806920.1 mRNA downstream 77642 7249581 ~ 7255345 (-) True LOC120562943
XM_039812356.1 mRNA downstream 86622 7241820 ~ 7246365 (-) False LOC120565981
XM_039810750.1 mRNA upstream 68512 7441070 ~ 7551615 (-) True usp34
XM_039815533.1 mRNA upstream 181474 7554032 ~ 7582024 (-) True xpo1a
XM_039815544.1 mRNA upstream 181474 7554032 ~ 7581212 (-) False xpo1a
XM_039817113.1 mRNA upstream 212837 7585395 ~ 7601539 (-) False fam161a
XM_039817105.1 mRNA upstream 212837 7585395 ~ 7601539 (-) True fam161a
TU3357 other downstream 92859 7225340 ~ 7240128 (-) True commd1
unassigned_transcript_11 other downstream 289969 7042947 ~ 7043018 (-) True trnae-uuc_9
unassigned_transcript_10 other downstream 290819 7042097 ~ 7042168 (-) True trnae-uuc_8
unassigned_transcript_9 other downstream 293434 7039482 ~ 7039553 (-) True trnae-uuc_7
unassigned_transcript_8 other downstream 294404 7038512 ~ 7038583 (-) True trnae-uuc_6
XR_005640913.1 other upstream 185209 7557767 ~ 7557898 (-) True LOC120569612
XR_005640903.1 other upstream 199763 7572321 ~ 7572457 (-) True LOC120569585
TU3830 other upstream 367266 7739824 ~ 7763948 (-) True G2752
TU3971 other upstream 834694 8207252 ~ 8209535 (-) False G2840
TU3972 other upstream 834694 8207252 ~ 8209535 (-) False G2840

Expression Profile