RNA id: XM_039815565.1


Basic Information

Item Value
RNA id XM_039815565.1
length 921
RNA type mRNA
GC content 0.51
exon number 7
gene id ift27
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12439942 ~ 12453356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGAAACGCCTTTGTGGCCGGTTGCTAAGAGACGGGTTGTGTCCATGTTGCCGTCTGCTGAGGATCAGAAGATATTTAGCTAGATGAGCCAGCTAAAAACAGAAAGTAGAGGTTGTTTTGCATCATTAATAAAACAAGAGCGTTTACTTACCGTGTCTGGAAGTTCCCCACTGTAATGGTGAAGTTGAGGGCGAGATGTCTGCTTGTCGGTAAGGTTTTgagaTGCTGCAGTAGGGAAAAGTGCCCTTTGCCATATGTTCCACAGTGACCGCACTCTCTTCCAGAAGAACTACAGCATGACAACCGGAGTGGAGCTGCTGATAAAATGTGTCAACATCCCAGAGACCACCGACAGTGTGGAGCTCTACATCATAGACTCTGCAGGGAAGCAGGCATTAGTGGAAGCCTGCGAGAAAATGTGGGGTGAGCTGTCGCTGCTGTGCCTGGTTTTTGACCTGACCAGTGAGCAGTCGTTTGCCAACTGCAGCCACTGGATGGAGAGAGTTCGTGCTCACTGCCAAGGCCTCCACATTCCAGGTGTCTTGGTGGGCAACAAGTCGGACCTGTCTGCTAGAAGGGAGGTCCAGGCGTCCGTGGCCCAGGAATGGGCTCAAAGCCAGGGTTTGGAGTACCACGAGACATCAGCTAAGGAGATGGAGAACTGTGACGCGGCGCTCCTCGGTTTAGCCCGGGCCTTCCACTCACTCTACCAGGAACGTCGCGAGACCATCCAGAACCTGAGTCCAGGCTAGAGTCTTccccagtcacacacacacacacaaacacacacacacacacaccttgattCAAAGAAATCCTATGTTCTTTGGTACTGCCCGTGCTGCAGGCCCTGCAGAAAAAGGCTTGTTCAGAATGATATTTTGATGTGACCGTGATTAAAGTTGTTTTTCTGTGATAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0001822 kidney development biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07934 IFT27, RAYL, RABL4; intraflagellar transport protein 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5258 lncRNA downstream 2540 12435552 ~ 12437402 (-) True G3828
TU5251 lncRNA downstream 11299 12428320 ~ 12428643 (-) True G3821
TU5201 lncRNA downstream 175936 12215455 ~ 12264006 (-) True G3783
TU5197 lncRNA downstream 184139 12207348 ~ 12255803 (-) True G3781
TU5196 lncRNA downstream 188102 12206851 ~ 12251840 (-) True G3780
TU5283 lncRNA upstream 13476 12466832 ~ 12496094 (-) True G3847
XR_005639064.1 lncRNA upstream 60051 12513407 ~ 12515106 (-) True LOC120558164
XR_005639063.1 lncRNA upstream 60051 12513407 ~ 12515105 (-) False LOC120558164
TU5304 lncRNA upstream 60051 12513407 ~ 12515065 (-) False LOC120558164
TU5294 lncRNA upstream 102591 12555947 ~ 12616154 (-) False G3857
XM_039811874.1 mRNA downstream 111306 12320596 ~ 12328636 (-) False LOC120565820
XM_039811865.1 mRNA downstream 111347 12320596 ~ 12328595 (-) True LOC120565820
XM_039813849.1 mRNA downstream 136811 12300865 ~ 12303131 (-) True LOC120567055
XM_039806797.1 mRNA downstream 162858 12274686 ~ 12277084 (-) True LOC120562870
XM_039806805.1 mRNA downstream 162861 12274686 ~ 12277081 (-) False LOC120562870
XM_039805464.1 mRNA upstream 188657 12642013 ~ 12659983 (-) True c1qtnf6b
XM_039796149.1 mRNA upstream 235572 12688928 ~ 12703781 (-) True LOC120543530
XM_039804120.1 mRNA upstream 250826 12704182 ~ 12720442 (-) False LOC120561143
XM_039804137.1 mRNA upstream 250826 12704182 ~ 12720442 (-) False LOC120561143
XM_039804127.1 mRNA upstream 250826 12704182 ~ 12720442 (-) False LOC120561143
TU4966 other downstream 1446741 10977643 ~ 10993201 (-) False nacc1b
TU4974 other downstream 1534707 10899558 ~ 10905235 (-) True G3586
TU4721 other downstream 2397938 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 2872714 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 2890044 9525543 ~ 9549898 (-) False G3312
TU5319 other upstream 188916 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 406928 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 408338 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_55 other upstream 409174 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_56 other upstream 412612 12865968 ~ 12866039 (-) True trnac-gca_3

Expression Profile