RNA id: TCONS_00065972


Basic Information

Item Value
RNA id TCONS_00065972
length 1967
RNA type unprocessed_pseudogene
GC content 0.42
exon number 6
gene id XLOC_033720
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25702443 ~ 25709533 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTTCCTTCAGTTCATCTCTCTCTGATGAGTCGTTCCAGTGCCACATATGTTTGGAGGTGTTCACAGACCCAGTCACTACTTCATGCGGACACAACTTCTGCAATATCTGTATCGAGGCATGCTGGAACAGTGAACAGCTCTTTCTATGTCCTATCTGTAAGAAAGACTTTGAAAATAAACCAGAACTAAAGATAAATACATCGTTCAAAAAGGTTGTTGATTGTTTCAAGGTGCATCAACAGCCAAAAAAACTTCAACAgcaaacaaaaactattttttgtgACGTTTGCTCTGAATATGCTGTAAAGTCATGTTTGCAGTGTGTAACATCTTTCTGTGAGACTCACCTGGAAATTCACAAAACCGCACCCAGGCTCAAGAAGCACAAATTGATCAACGCAGTGGAGAACCTGGAAGACTATATCTGCAGCAAACATGAAAAACCCCTGGAGATGTTCTGCAGAGATGATCAGACCTGTCTGTGTCTGTTTTGCACTGAAACAGAACATAAGCACCATAAAGCTGTTCCTATTGAGGAAGAGAGTGGACACAGAAAGGTTTACCTGGAAAAGACACAAGCAGAAATCCAAGTGATGATGAAGAAGTGAAAAGATTAAGGAGATCAAAAATGTAGTAAAGTCAAAGAAGAGCAACACTGAGAGAAAGAAAGCACATCACGTTGAACTGTTCAGTGATTTGATGTGCTCCATTGAGAGATGTCAGGGTGAGCTGCTGGAGGTGATGGAGCAAAAGCAAAAAGCAGCTGAGAAGCAGGCTGAAGAGCTGATTATAGCGCTGAAGCAGGAGATCAAAGAACTCAAGAGGAGAAACACTGAGCTGGAGGAGCTCTCACACACTGAAGATCACCTGCACCTCCTACAGGTTTACTCGTCTGTGTGTGGCCCTCCACAAGTCAATACCTGGACAAACATCAGTATCAGTAACACTGATCTAAAGAACACAACAACTTTGGAAAAAGCTCTTGCCTCCCTCAAGGAAACAGTCAACAAGGAGCTGAAAAAAATCCATGACATCACTGAGCCTTCTGTTCCTAAAAAATTCAACTTTACCACCATCGACATCAACGCAATCTTCAGCcaacagtgtgtttgtgtttggcaGCACAAACATTGATTCTGTTCCCTCCAATCCTTTACTGGTCCCTAAAAGTTCTTCAGTGATGAAGATGAAGAATGCATCTGTTCCTATGAGAACAAAGCAAGGCGTCCTGACAGAAAACTCAACAATTAAAAATACTGACGTTCAGACAGAGAGACAAATCTACTTTACTCTGGGTAAAACAGATAATCTATCAAGAAACACAACAAGTAATCAACAAGTGAATGTGTCGTGCGTCAGTGTGGATGTTTCTCCATTAGTAGATTTGAGAACAATCCAGAAACTTTACGCAGTGGATGTGATTTTGGATCCCAACACAGCTTATCCTAAACTCGTCCTGTCTAAAAATGGGAAACAAGTGAGTCATGGAGGAACCTGGACAGATGTTCCCAATAACCCTGAGAGATTTGACACATCTGCCTGTGTCCTGGGAAAGGATGGGTTTTCCTGTGGAAGATTTTACTTTGAGGTGCAAGTTAGTGATAAGGCTGAATGGGATTTGGGAATGGCTCGAAAGTCCATCAACAGAAAAGGGAAAATAAAAGTGTGTCCCGAGTGTGGATTTTGGAGTATATGGAAGAGGAATGGGAATGAATATGTGGCAAACGAATCTAGTCCTGTTTGGCTTTCCCTGAAAGACAAGCCACAGAAGGTGGGAGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTACAATGTGGAGACCGAGGCTTTAATCTATTCATTCACTGGTCAGTCTTTCATTGAAAAAATCTATCCATTTTTCAGCCCGTGCAACAAAAGAGGAAATACAAACTCAAAGCCTCTGATCATCTCTACAATTAATTACCCCAATTACTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000073484

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068847 lncRNA upstream 141251 25557629 ~ 25561192 (+) True XLOC_033719
TCONS_00065971 lncRNA upstream 355529 25344557 ~ 25346914 (+) True XLOC_033718
TCONS_00068829 lncRNA upstream 655134 25042052 ~ 25047309 (+) False XLOC_033712
TCONS_00068830 lncRNA upstream 655134 25042064 ~ 25047309 (+) False XLOC_033712
TCONS_00068831 lncRNA upstream 655134 25042068 ~ 25047309 (+) False XLOC_033712
TCONS_00068848 lncRNA downstream 27996 25737529 ~ 25740930 (+) True XLOC_033721
TCONS_00065975 lncRNA downstream 148850 25858383 ~ 25859467 (+) False XLOC_033723
TCONS_00065978 lncRNA downstream 203722 25913255 ~ 25917071 (+) False XLOC_033724
TCONS_00065982 lncRNA downstream 211267 25920800 ~ 25974505 (+) False XLOC_033725
TCONS_00068849 lncRNA downstream 351186 26060719 ~ 26061569 (+) True XLOC_033730
TCONS_00065970 mRNA upstream 353846 25323742 ~ 25348597 (+) False XLOC_033718
TCONS_00065968 mRNA upstream 408339 25135739 ~ 25294104 (+) False XLOC_033717
TCONS_00065969 mRNA upstream 409915 25221757 ~ 25292528 (+) True XLOC_033717
TCONS_00065967 mRNA upstream 572862 25126629 ~ 25129581 (+) True XLOC_033716
TCONS_00065966 mRNA upstream 597699 25103994 ~ 25104744 (+) True XLOC_033715
TCONS_00065973 mRNA downstream 116134 25825667 ~ 25854387 (+) True XLOC_033722
TCONS_00065974 mRNA downstream 148847 25858380 ~ 25878560 (+) False XLOC_033723
TCONS_00065976 mRNA downstream 148878 25858411 ~ 25876900 (+) True XLOC_033723
TCONS_00065977 mRNA downstream 203692 25913225 ~ 25918281 (+) False XLOC_033724
TCONS_00065980 mRNA downstream 205556 25915089 ~ 25917390 (+) True XLOC_033724
TCONS_00065960 other upstream 656022 25046348 ~ 25046421 (+) True XLOC_033712
TCONS_00065959 other upstream 656235 25046139 ~ 25046208 (+) False XLOC_033712
TCONS_00065958 other upstream 656469 25045848 ~ 25045974 (+) False XLOC_033712
TCONS_00065957 other upstream 656964 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065956 other upstream 657197 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065979 other downstream 203725 25913258 ~ 25917071 (+) False XLOC_033724
TCONS_00065983 other downstream 264116 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00065985 other downstream 319126 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065992 other downstream 361341 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065993 other downstream 361893 26071426 ~ 26071508 (+) True XLOC_033733

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU146404 True 3917 lncRNA 0.36 3 CI01000026 1974256 ~ 1978280 (-)
eurasian perch (Perca fluviatilis) TU146404 True 333 lncRNA 0.51 1 NC_053121.1 31668978 ~ 31669310 (+)