RNA id: TCONS_00068848


Basic Information

Item Value
RNA id TCONS_00068848
length 539
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id XLOC_033721
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25737529 ~ 25740930 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgccAACCGGAGTCGCTGTGGAGGGAAGTGAAGCGATGTCCCTTTAAGCGCAGACGGCGAGCGGAGCGGAACATCTGCGTCTCCTCCTCCGTGACACCGCGTCCTATGGCCGGCTTGACTCCGCCCAGCAGTCAGGAAGATACAGAGCTCTCTGATCGTAAGTGGCCGTGTAGAGCGAGAGCTGATACAGACGTTTGTGTTATTAGTCCCTGTTCAAGAGAATCAACCTGACTGACGCTTGAGCGGAATGTCAGATTAGCCCGCGTTCGGACGCGCTTCTCATCATTCCACGTTGCTTTATCGCGCACGAGACTGGGCGATAAGCAGCATTTCCAGACTTCAATTAACCACATTCTATTACACTCCCATATCAGGCTTTTCTTTGTAAGACAGTTTACACATACTGAAACAAAGTGGATTTAACAGTGGCTACGTGGTTTACCCGCACTCCAAGATGCTTCTGGTCTCCCAGCGGCTAGAATCACCTCGCATGGACCCATTAaaAGGCGATGTTTGTGAGTTCAAAAGCAGTCTTCAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:2000147 positive regulation of cell motility biological_process
GO:0048468 cell development biological_process
GO:0061387 regulation of extent of cell growth biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0010977 negative regulation of neuron projection development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0031345 negative regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0001558 regulation of cell growth biological_process
GO:0048869 cellular developmental process biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0051272 positive regulation of cellular component movement biological_process
GO:0010769 regulation of cell morphogenesis involved in differentiation biological_process
GO:0010771 negative regulation of cell morphogenesis involved in differentiation biological_process
GO:0048638 regulation of developmental growth biological_process
GO:0040008 regulation of growth biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0050770 regulation of axonogenesis biological_process
GO:0050771 negative regulation of axonogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0045926 negative regulation of growth biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0008361 regulation of cell size biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068847 lncRNA upstream 176337 25557629 ~ 25561192 (+) True XLOC_033719
TCONS_00065971 lncRNA upstream 390615 25344557 ~ 25346914 (+) True XLOC_033718
TCONS_00068846 lncRNA upstream 690220 25045380 ~ 25047309 (+) False XLOC_033712
TCONS_00065955 lncRNA upstream 690777 25044380 ~ 25046752 (+) False XLOC_033712
TCONS_00065953 lncRNA upstream 690947 25042630 ~ 25046582 (+) False XLOC_033712
TCONS_00065975 lncRNA downstream 117453 25858383 ~ 25859467 (+) False XLOC_033723
TCONS_00065978 lncRNA downstream 172325 25913255 ~ 25917071 (+) False XLOC_033724
TCONS_00065982 lncRNA downstream 179870 25920800 ~ 25974505 (+) False XLOC_033725
TCONS_00068849 lncRNA downstream 319789 26060719 ~ 26061569 (+) True XLOC_033730
TCONS_00065990 lncRNA downstream 323805 26064735 ~ 26068968 (+) False XLOC_033731
TCONS_00065970 mRNA upstream 388932 25323742 ~ 25348597 (+) False XLOC_033718
TCONS_00065968 mRNA upstream 443425 25135739 ~ 25294104 (+) False XLOC_033717
TCONS_00065969 mRNA upstream 445001 25221757 ~ 25292528 (+) True XLOC_033717
TCONS_00065967 mRNA upstream 607948 25126629 ~ 25129581 (+) True XLOC_033716
TCONS_00065966 mRNA upstream 632785 25103994 ~ 25104744 (+) True XLOC_033715
TCONS_00065973 mRNA downstream 84737 25825667 ~ 25854387 (+) True XLOC_033722
TCONS_00065974 mRNA downstream 117450 25858380 ~ 25878560 (+) False XLOC_033723
TCONS_00065976 mRNA downstream 117481 25858411 ~ 25876900 (+) True XLOC_033723
TCONS_00065977 mRNA downstream 172295 25913225 ~ 25918281 (+) False XLOC_033724
TCONS_00065980 mRNA downstream 174159 25915089 ~ 25917390 (+) True XLOC_033724
TCONS_00065972 other upstream 27996 25702443 ~ 25709533 (+) True XLOC_033720
TCONS_00065960 other upstream 691108 25046348 ~ 25046421 (+) True XLOC_033712
TCONS_00065959 other upstream 691321 25046139 ~ 25046208 (+) False XLOC_033712
TCONS_00065958 other upstream 691555 25045848 ~ 25045974 (+) False XLOC_033712
TCONS_00065957 other upstream 692050 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065979 other downstream 172328 25913258 ~ 25917071 (+) False XLOC_033724
TCONS_00065983 other downstream 232719 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00065985 other downstream 287729 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065992 other downstream 329944 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065993 other downstream 330496 26071426 ~ 26071508 (+) True XLOC_033733

Expression Profile

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