RNA id: TCONS_00065955


Basic Information

Item Value
RNA id TCONS_00065955
length 535
lncRNA type lincRNA
GC content 0.40
exon number 8
gene id XLOC_033712
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25042052 ~ 25047309 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcagtttcCATGCATTCTGCTGGGATGAAGCTGAGACGTGTTAAATTCAAGgaTTGCTGCAGAGGATGGGTTTATGGCGATCATGGACATCTTATGGGATCCCTGGTTAAAGTCTTTGATGGGTTGAGTCCTTCTAGCGGTTTTAGGTTCCAGTCAAGATGTACACAATGGCAAGACGCCTTGTCTGAAGTTATCCAAACAGgACTGTAGTGGACCAAATTGTGCATCCGTGCAGAAAGAGATGCTACAAGGATTTACTGATCGATTGCCATCTTCATGTACAGATTTCAACTGCATGTTGCTGAAAGCCTTAAGAGGGAGAGGTGGACAATTTTGTACTTTTCAGTGTAATGCAAGCTCTTGCTGAAAGCAGCTAAGAGgaacaaataaatgattttgCTGAACTCTGTCTCTTTGACTTTAGATTTATCCCAAGGTAACAAGTACTGTGAGTTTTACTATTGTGCAAGACTGACCTTTTTTTATAAGCTCAATTCATTaacttaaagaaataataaaccatttattTGTGCAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0001510 RNA methylation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009451 RNA modification biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005732 small nucleolar ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-141222-32 Is expressed in blastomere.

Ensembl:

ensembl_id ENSDART00000160819

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065950 lncRNA upstream 536 25042630 ~ 25043844 (+) False XLOC_033712
TCONS_00065945 lncRNA upstream 26024 25015176 ~ 25018356 (+) True XLOC_033710
TCONS_00065938 lncRNA upstream 75283 24964909 ~ 24969097 (+) True XLOC_033708
TCONS_00068828 lncRNA upstream 228662 24814851 ~ 24815718 (+) False XLOC_033705
TCONS_00068573 lncRNA upstream 328580 24715477 ~ 24715800 (+) True XLOC_033703
TCONS_00065971 lncRNA downstream 297805 25344557 ~ 25346914 (+) True XLOC_033718
TCONS_00068847 lncRNA downstream 510877 25557629 ~ 25561192 (+) True XLOC_033719
TCONS_00068848 lncRNA downstream 690777 25737529 ~ 25740930 (+) True XLOC_033721
TCONS_00065975 lncRNA downstream 811631 25858383 ~ 25859467 (+) False XLOC_033723
TCONS_00065978 lncRNA downstream 866503 25913255 ~ 25917071 (+) False XLOC_033724
TCONS_00065946 mRNA upstream 3404 25033924 ~ 25040976 (+) False XLOC_033711
TCONS_00065947 mRNA upstream 3962 25036188 ~ 25040418 (+) False XLOC_033711
TCONS_00065948 mRNA upstream 3973 25036219 ~ 25040407 (+) True XLOC_033711
TCONS_00065943 mRNA upstream 15119 25015151 ~ 25029261 (+) False XLOC_033710
TCONS_00065944 mRNA upstream 20010 25015153 ~ 25024370 (+) False XLOC_033710
TCONS_00065961 mRNA downstream 2793 25049545 ~ 25058145 (+) False XLOC_033714
TCONS_00065962 mRNA downstream 2825 25049577 ~ 25077141 (+) False XLOC_033714
TCONS_00065963 mRNA downstream 6579 25053331 ~ 25058145 (+) False XLOC_033714
TCONS_00065964 mRNA downstream 13093 25059845 ~ 25100304 (+) True XLOC_033714
TCONS_00065965 mRNA downstream 57213 25103965 ~ 25104398 (+) False XLOC_033715
TCONS_00065954 other upstream 1300 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065919 other upstream 513711 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065907 other upstream 780641 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065899 other upstream 927236 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 967559 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065972 other downstream 655691 25702443 ~ 25709533 (+) True XLOC_033720
TCONS_00065979 other downstream 866506 25913258 ~ 25917071 (+) False XLOC_033724
TCONS_00065983 other downstream 926897 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00065985 other downstream 981907 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065992 other downstream 1024122 26070874 ~ 26071007 (+) True XLOC_033732

Expression Profile

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