RNA id: TCONS_00065973


Basic Information

Item Value
RNA id TCONS_00065973
length 2136
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_033722
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25825667 ~ 25854387 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAATTGCAGTTTCTGGGTAAGTTAAACACGTTTGCAAGCTAAAGTTTGTTCGGCTCGCACGTTATGACTTTTCGACGAGGGTCTGGCTTCCATTTACGCCTGCTTAGAGAAAACTCCAGGCTAAATGCGGCACTTGAGAGCTGTCGTAAAGTAAACGCAGTGATGGCCTCGGCTCCTATAGCACCTTATAACTCCAGTCCTCTTGGGAACAGCTCCAGCCAAAACGCGTCCAGAGAGAGCCTGAAGATGGAGCCGCTGGCAGATGTTACGCTGCTGCCGGGAGAAGAGAGAGTGATCGATAAAGATATCATCTACATCTGCCCCTATAATGCTGCAGTCAAAGGAAAGGTGTTCATCACCAACTACAGACTCTACTTCAAAAACACTGACTCAGAGACACCAGTTACCCTGAACATCCCCTTAGGTGTCATAAGCCGTGTAGAAAAGATGGGCGGAGCCTCCAGTCGAGGAGAAAACTCTTACGGGCTTGAAATCACCTGCAAGgACATGAGGAACCTGCGATTTGCTCTGAAGCAAGAAGGCCACAGTCGAAGGGACATCTTTGAGATTATTTTCAAATACGCTTTCCCACTTTCTCACGGAATGCAACTCTTTGCCTTTTTAAGTCAGGAGAAGTATGAGGAGAATGGCTGGAACGTGTATGAGGCCTTGGAAGAGTATAGGAGGCAGGGTCTACCCAATAATGAGTGGAGGGTCACTTTCATCAATAAGAACTACGAGCTCTGTGACACCTATCCCACAATTCTTGTTGTTCCCTACAAGGCCACAGAAGATGATCTACGAAAAGTGGCTACATTTCGATCGCGCTGCCGCATTCCGGTGATGTCGTGGTTCCATAAGGAGAACCATGCTGTGATCACACGGTGTAGTCAGCCTTTGGTGGGTATGAGTGGCAAGCGCAACAAAGATGATGAGCGTTATTTGGACCTAATCCGGGAGGCCAATGGTACTACCAAACTCACCATCTATGACGCCAGGCCCAACGTCAATGCTGTGGCAAACAAGGCCACGGGCGGAGGTTATGAGGGTGATGATGCTTATCAGAACGCAGAACTGGTCTTTCTGGACATTCATAATATTCATGTCATGAGGGAGTCACTGAAGAAGCTAAAGGACATTGTTTACCCCAATGTGGAGGAATCTCATTGGCTCTCCAGCCTGGAGTCCACGCATTGGCTAGAGCATATCAAGCTGGTGCTGTCGGGGGCCATTCAGGTGGCTGATAAGGTGTCTTCTGGGAGTTCTGTGATGGTTCACTGCAGTGATGGCTGGGATCGCACTGCTCAGCTCACATCTCTGTCCATGCTGATGCTGGACTCCTACTATAGGACTCTCAGGGGCTTCCAGGTCCTGATGGAGAAGGAGTGGATCAGCTTCGGACACAAGTTTGCCTCAagAATTGGCCATGGGGACAAAAACCATGCGGATCAGGACAGGTCACCTATCTTTTTGCAATTTATTGACTGCGTGTGGCAAATGACTAAACAGTTCCCAACAGCGTTTGAGTTTAACGAACGTCTCCTGGTGGTCATTCTGGATCATCTGTACAGCTGCCGCTTCGGCACTTTCCTCTACAACTGTGAGAGTGTTCGTGACAGCAATAATGTTCGGACAAAGACTGTGTCTCTGTGGTCTTACATTAATAGTGACACGTCTTTGTATATAAACCCCTTCTACACGCCGGAGTCCAGTCGGGTGCTGTACCCTGTAGCCAGCATGCGCCACCTAGAGCTGTGGGTCACTTACTACATCAGGTGGAACCCGCGCATACAACACCAGCAACAGAGTCCAGTGGAGCAGCGCTACAAAGAGCTTCTGGCATTAAGGGATCAGTACCTGAAGAAACTAGAGGAGCTGCAGCTCTCAGACTCCGCCCCTTCCTCCACCCACTTGACAAACAGCTCCACCCCCAATGCTGCCACGCCCAATCAGCACATCACACATTTGCAGACACCATTTTGATTGCAAACTGTTAAAGACATTGGACACTTGTACATAGCAATAGTGATTAGTTATGGTAACACGATTAGTAGTGATGTCGACGATAACAAAAACAATTATGCAATAAACCACAGTACAGCCTTCAtcgtgcaaaaaaaataaacgttAAGC

Function

GO:

id name namespace
GO:0044088 regulation of vacuole organization biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0045109 intermediate filament organization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0007525 somatic muscle development biological_process
GO:0007528 neuromuscular junction development biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0048311 mitochondrion distribution biological_process
GO:0007626 locomotory behavior biological_process
GO:0010506 regulation of autophagy biological_process
GO:0046716 muscle cell cellular homeostasis biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0016311 dephosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function
GO:0004438 phosphatidylinositol-3-phosphatase activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04070 Phosphatidylinositol signaling system
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-051113-128 Predicted to enable phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity and phosphatidylinositol-3-phosphatase activity. Acts upstream of or within several processes, including muscle cell cellular homeostasis; skeletal muscle fiber development; and somatic muscle development. Predicted to be located in several cellular components, including late endosome; ruffle; and sarcomere. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart tube; muscle; and skeletal muscle. Used to study centronuclear myopathy. Human ortholog(s) of this gene implicated in centronuclear myopathy X-linked and congenital structural myopathy. Orthologous to human MTM1 (myotubularin 1).

Ensembl:

ensembl_id ENSDART00000149835

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068848 lncRNA upstream 84737 25737529 ~ 25740930 (+) True XLOC_033721
TCONS_00068847 lncRNA upstream 264475 25557629 ~ 25561192 (+) True XLOC_033719
TCONS_00065971 lncRNA upstream 478753 25344557 ~ 25346914 (+) True XLOC_033718
TCONS_00068846 lncRNA upstream 778358 25045380 ~ 25047309 (+) False XLOC_033712
TCONS_00065955 lncRNA upstream 778915 25044380 ~ 25046752 (+) False XLOC_033712
TCONS_00065975 lncRNA downstream 3996 25858383 ~ 25859467 (+) False XLOC_033723
TCONS_00065978 lncRNA downstream 58868 25913255 ~ 25917071 (+) False XLOC_033724
TCONS_00065982 lncRNA downstream 66413 25920800 ~ 25974505 (+) False XLOC_033725
TCONS_00068849 lncRNA downstream 206332 26060719 ~ 26061569 (+) True XLOC_033730
TCONS_00065990 lncRNA downstream 210348 26064735 ~ 26068968 (+) False XLOC_033731
TCONS_00065970 mRNA upstream 477070 25323742 ~ 25348597 (+) False XLOC_033718
TCONS_00065968 mRNA upstream 531563 25135739 ~ 25294104 (+) False XLOC_033717
TCONS_00065969 mRNA upstream 533139 25221757 ~ 25292528 (+) True XLOC_033717
TCONS_00065967 mRNA upstream 696086 25126629 ~ 25129581 (+) True XLOC_033716
TCONS_00065966 mRNA upstream 720923 25103994 ~ 25104744 (+) True XLOC_033715
TCONS_00065974 mRNA downstream 3993 25858380 ~ 25878560 (+) False XLOC_033723
TCONS_00065976 mRNA downstream 4024 25858411 ~ 25876900 (+) True XLOC_033723
TCONS_00065977 mRNA downstream 58838 25913225 ~ 25918281 (+) False XLOC_033724
TCONS_00065980 mRNA downstream 60702 25915089 ~ 25917390 (+) True XLOC_033724
TCONS_00065981 mRNA downstream 66405 25920792 ~ 26005691 (+) False XLOC_033725
TCONS_00065972 other upstream 116134 25702443 ~ 25709533 (+) True XLOC_033720
TCONS_00065960 other upstream 779246 25046348 ~ 25046421 (+) True XLOC_033712
TCONS_00065959 other upstream 779459 25046139 ~ 25046208 (+) False XLOC_033712
TCONS_00065958 other upstream 779693 25045848 ~ 25045974 (+) False XLOC_033712
TCONS_00065957 other upstream 780188 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065979 other downstream 58871 25913258 ~ 25917071 (+) False XLOC_033724
TCONS_00065983 other downstream 119262 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00065985 other downstream 174272 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065992 other downstream 216487 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065993 other downstream 217039 26071426 ~ 26071508 (+) True XLOC_033733

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_02080994_02090637.mRNA True 1938 mRNA 0.49 12 CI01000026 2080661 ~ 2090637 (+)