RNA id: TCONS_00066342



Basic Information


Item Value
RNA id TCONS_00066342
length 856
RNA type transcribed_unprocessed_pseudogene
GC content 0.45
exon number 1
gene id XLOC_033914
representative True

Chromosome Information


Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38193343 ~ 38194702 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGATCTGAGAGAGTACTTGAATAGGATTGGGTTTACTGGCCAGTTCAACAAACCTGACCTGGACAGTTTGTTCACCATCCACAAGCTGCATGTTATGAGTGTCCCATTTGAGAACTTCAGTGTTCACAATGGGGAGAAGAACTCAATGGACCTGCATGTTATCTATAACAAAATAGTCAAGAGCAATCGAGGAGGCTGGTGTTGTGAAAACAACCTCTTGTTCTCATGGGCCCTGAAGGAGATGGGATACAAATCTACCATATTGGGTGGCAGGGTGTTCAACTCTCTGGAACAGGACTTCCTTCCTAGTGACTCTCATCTCATCAATCTGGTGGAGATTGATGGAAAGCAGTACATCGCTGACGTGAGTTTTGGTATGTCATATCAGATCTGGTATCCCTTAGAGTTGATCTCAGGTAAAGACCAGCCACAGCCTCCAGGAGTGTTTCGCCTCACAAACAACGGTGAGAAGTGGATTCTGCAGAAGACCGGAAGGAAGCAAATAATTGTAGATAACGGCTTTGTGGATTCTACCCTTGTTGACAAACGGCTCACCAAGACATTATACTCTCTCACATTAACACCACGTGATGCAGATCATTTCCTGGAGATGTCGGTTATGCTGCAGACTAATCCAGACTCTCTCTTCCTGCTCAAGACCATTTGCTCCCTTCAGACGGTCACTGGCTACAGAGCTCTGCTCGGCTCGACATACAGTGAAGTCACTTTCAAAGAGGACTCAGATTCAGTGGAAATGAAGAAAATCCTAGATGATGAGATTGAGGATGTGCTGAAAGAAAAGTTTAACATGGTGTTGGTTAATAAGTTCACACCTAAAAACCAGAAAGCTGATTAC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000052356

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00068909 lncRNA upstream 25633 38151036 ~ 38168214 (+) True XLOC_033913
TCONS_00066340 lncRNA upstream 48047 38144363 ~ 38145800 (+) True XLOC_033912
TCONS_00068907 lncRNA upstream 84207 38100409 ~ 38109640 (+) False XLOC_033911
TCONS_00066344 lncRNA downstream 34368 38229070 ~ 38236113 (+) False XLOC_033916
TCONS_00068910 lncRNA downstream 40210 38234912 ~ 38236240 (+) True XLOC_033916
TCONS_00066345 lncRNA downstream 51225 38245927 ~ 38247747 (+) True XLOC_033917
TCONS_00066350 lncRNA downstream 65757 38260459 ~ 38264046 (+) True XLOC_033919
TCONS_00066353 lncRNA downstream 80635 38275337 ~ 38277251 (+) True XLOC_033920
TCONS_00066337 mRNA upstream 98523 38089650 ~ 38095324 (+) False XLOC_033910
TCONS_00066338 mRNA upstream 100237 38090515 ~ 38093610 (+) True XLOC_033910
TCONS_00066335 mRNA upstream 438501 37742299 ~ 37755346 (+) True XLOC_033906
TCONS_00066333 mRNA upstream 801675 37372479 ~ 37392172 (+) False XLOC_033904
TCONS_00066334 mRNA upstream 801675 37377335 ~ 37392172 (+) True XLOC_033904
TCONS_00066346 mRNA downstream 55156 38249858 ~ 38257848 (+) False XLOC_033918
TCONS_00066347 mRNA downstream 60716 38255418 ~ 38256288 (+) True XLOC_033918
TCONS_00066348 mRNA downstream 64047 38258749 ~ 38264092 (+) False XLOC_033919
TCONS_00066349 mRNA downstream 65732 38260434 ~ 38264380 (+) False XLOC_033919
TCONS_00066351 mRNA downstream 70661 38265363 ~ 38277255 (+) False XLOC_033920
TCONS_00066319 other upstream 1718203 36467822 ~ 36475644 (+) False XLOC_033894
TCONS_00066313 other upstream 2430634 35736321 ~ 35763213 (+) True XLOC_033889
TCONS_00066310 other upstream 2441236 35679424 ~ 35752611 (+) False XLOC_033889
TCONS_00066343 other downstream 7836 38202538 ~ 38203393 (+) True XLOC_033915
TCONS_00066356 other downstream 154963 38349665 ~ 38364944 (+) False XLOC_033923
TCONS_00066360 other downstream 206392 38401094 ~ 38424009 (+) False XLOC_033924
TCONS_00066366 other downstream 316562 38511264 ~ 38527366 (+) True XLOC_033925
TCONS_00066373 other downstream 454434 38649136 ~ 38649529 (+) True XLOC_033929

Expression Profile


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