RNA id: TU121864


Basic Information

Item Value
RNA id TU121864
length 214
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G90575
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 37996560 ~ 37996773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attaattcatgatttgtgcattacttcattcctttatatcttatgaatcatcaggaattgacatgaGTTCAATAACCTGTTTGGCCTTACATCACTTTGATTATTTGGAATGGTTTTGTATAGGGGTGCAACAGATCACAAAACTCACACAGTTGGATCGGATCACAGTTGTGAGTCACAAATCGGATACGTTTTcagatcagcacaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121807 lncRNA upstream 298583 37697764 ~ 37697977 (+) True G90523
TU121568 lncRNA upstream 1273733 36721925 ~ 36722827 (+) True G90311
XR_005639939.1 lncRNA upstream 1400867 36594156 ~ 36595693 (+) False LOC120563368
XR_005639938.1 lncRNA upstream 1400867 36594160 ~ 36595693 (+) False LOC120563368
XR_005639937.1 lncRNA upstream 1400867 36594257 ~ 36595693 (+) True LOC120563368
XR_005640093.1 lncRNA downstream 56132 38052905 ~ 38054178 (+) True LOC120564394
TU121876 lncRNA downstream 57736 38054509 ~ 38055005 (+) False G90583
TU121879 lncRNA downstream 57736 38054509 ~ 38055564 (+) False G90583
TU121877 lncRNA downstream 57890 38054663 ~ 38055564 (+) True G90583
TU121878 lncRNA downstream 57890 38054663 ~ 38055564 (+) False G90583
XM_039809417.1 mRNA upstream 17243 37947589 ~ 37979317 (+) True kcng4a
XM_039808255.1 mRNA upstream 89403 37815654 ~ 37907157 (+) True si:dkey-246g23.2
XM_039808257.1 mRNA upstream 89403 37815654 ~ 37907157 (+) False si:dkey-246g23.2
XM_039808256.1 mRNA upstream 89403 37815903 ~ 37907157 (+) False si:dkey-246g23.2
XM_039808258.1 mRNA upstream 89403 37815903 ~ 37907157 (+) False si:dkey-246g23.2
XM_039807656.1 mRNA downstream 612 37997385 ~ 38007905 (+) True si:dkey-246g23.4
XM_039810056.1 mRNA downstream 25604 38022377 ~ 38034694 (+) False wfdc1
XM_039809303.1 mRNA downstream 87617 38084390 ~ 38099254 (+) True dyrk4
XM_039809304.1 mRNA downstream 87618 38084391 ~ 38097961 (+) False dyrk4
XM_039808350.1 mRNA downstream 103765 38100538 ~ 38108087 (+) True ndufa9a
unassigned_transcript_383 other upstream 1532992 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2211144 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 2785629 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 3561243 34434089 ~ 34435317 (+) True G89836
TU120882 other upstream 3575379 34381836 ~ 34421181 (+) True G89813
XR_005640145.1 other downstream 25604 38022377 ~ 38034694 (+) True wfdc1
TU121880 other downstream 57736 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 661593 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 678802 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 880277 38877050 ~ 38879902 (+) True G90693

Expression Profile