RNA id: XM_039814034.1


Basic Information

Item Value
RNA id XM_039814034.1
length 2686
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC120567168
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6079087 ~ 6109155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTACAATTGAGCGCGTGGTCAGCAACAAGAAGACGGGGACATCTGCTGCTAACAGGTCCCCTCGTGGCCAGcttctctccacacacactcttaccTCACCTCAGGGCCAGCTCAGCATCATGCTGAGCCAGGAGATCTTGAAGAAGCTGAAGTTGCCAGATCTGAATGATGTCAGCCAGTACATCAGGAGTGTCTCCACCCCGGTGTTGGTCAGCACGGGGGCCATGGCTTTTGCGACAACCTACTACCTGGCGACACGACCCAAGGCCATCCCACCGGTCTGCGACCTCCGAATGCAGTCAGTGGAGGTTCCGGGTGGAGACTTTGCACGCCAGTCAGTTTTGCTGAACGGAAACGGTCCCATAACACATTTCTACGAGGATGCCCGAACATTGTACGAGTTCTTCCTCAGAGGGGTCCGGGTTTCCAATAATGGTCCCTGTCTGGGCTCCAGGAAACCAAAACAGCCGTATGAATGGATGTCCTATAGAGAGgTATTGGAGCGAACAGAGAATCTGGGCTCAGCATTTCTCCACAAAGGACACTCTAAGACCACAGACCCCCACATTGGCATCTTCTCTCAGAACAGACCTGAGtggacCATCTGTGAGCTGGCATGTTACACCTATTCTCTGGTGTCAGTCCCTCTGTACGACACACTGGGAACAGAAGCCATTGGTTACATTATAGACCTAGCTTCCATCTCGACTTTGGTGTGTGACGTGGTAGATAAAGTCAACCTGGTGCTGGACTGTGTCAAGGACAGGAAACACTCCGTAAAGACCATCGTTCTAATGGAGACCCCCAGTGCCGAGCTGGTCGACAGGTGTCAACAGGCTGGAATCCACATCCTCAGCCTGCAGGAGATGGAGTCCATCGGCAAGGCCAACCATCGCCAACCCATGCCTCCACGACCTAAGGACATGGCTCTCATCTGCTTTACCAGTGGAACAACCgGGAACCCAAAGGGAGCTATGCTGACACATGAGAATGTTGTGTCCAACTGCTCAGCCTTCATCAAATTGACAGAGTCGTACGCTCAGACCACCTCAGATGATGTCATGCTGTCTTTTCTGCCTCTGGCCCACATGTTTGAGAGGGTGGTGGAGGGACTGATGATAGTCAATGGAGCCCGGATTGGCTTTTTCCAGGGAGATATTCGTCTGCTGTCAGATGACCTGAACACGCTGAAACCTACTGTGTTTCCTGTGGTACCCCGACTCCTTAACAGAATGTATGATAAGatcTTTGGGCAGGCCAACACCTCTCTGAAGCGCTGGCTGCTGGGATTCGCCTACAGAAGGAAGCAGGCCGAGATAAGGAAAGGCATCGTGAGGAGAGACAGTATCTGGGATCGACTCATCTTCCGGAAGGTTCAGGCCAGCCTCGGCGGCCGCGTGCGTCTCATGCTGACTGGAGCTGCTCCCATCTCTCCTGCTGTCCTCAACTTCCTCAGAGCCGCAGTAGGCTGTCAGTTCTATGAAGGTTATGGACAGACAGAGTGCACTGCTGGATGCACCATGACCATGCCGGGTGAATGGAATGCAGGACACGTCGGAGCTCCTCTGCCCTGCAACTCCCTTAAACTGGTGGATGTGCCTGAGATGAACTACCTGGCTGCAAACGGCGAGGGAGAGgtgtgtgtgaaggGTCCTAACGTGTTCCAGGGCTATCTGAAGGAGCCCGAGAAGACCGCCGAGGCTATTGATGCAGATGGTTGGCTTCACACTGGAGACGTAGGAAAATGGCTTCCTAATGGCACTCTGAAGATCGTGGACAGGAAGAAGCACATCTTTAAGCTGGCACAGGGGGAGTACATTGCTCCGGAGAAAATAGAGAACATCTACATGAGGAGTGATGCAGTGGCACAGGTCTTTGTGCATGGAGACAGTCTGCAGGCATGTCTGGTAGCAGTGGTGGTTCCTGACCCTGACTTCCTGTGTGGCTGGATAAAGAGGACCCTGGGACTGGAGGCCAGCTACCAGGAACTGTGTGGCAGAGCGGAAGTCAAGGCAGCCATCTTGAAGGACATGGTGCAACTGGGCAAGGATGGAGGCCTCAAGTCCTTTGAGCAGGTGAGGGCCATCTGCATCCACACCGAGCTGTTCTCAATCGAGAACGGCCTGCTCACTCCAACAATGAAGGCCAAGAGGAACGAAATGCGACAGTACTTCAGATCCCAGATAGACAAACTGTACGCCGGGATTAAAATGTAGAAGGAGAGCAACATGGAAGACCAGACACACAAGCTACCAAAGGCAAAAAAAAGGAAGCGGGCAGCACAAGCTAAAGCACACACAGGGAGGCAAATGAGGGGATCCCGTCTTACCAAAAGGACCATCAGCATGTCTAGTCCTCATGATTCAGAGcatttagaacaaaaaaaatgaccTTTAGGTGCCACAAGACCTCCGAAGGTCCAGAGTAGACTTTATGCTTAAAATAAATTCTATTCTATCTAGTTTTTGATGAAATAGTTTTGCCTatgctatatacagtacaaatatGTAACAATGTGTTGATTCCAATCAGCTATTTTGTGATAATATCTCCATTAAGGATGCTTTTTAAAGGGAAATTTGCAGCTCTGTAGCATCGGACATCTCAGGACTTCAGTGGCAAGAaccacacacgcgcacacacacacacacacacacacacacacacacacacgtcttttAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139376 lncRNA upstream 158547 5917239 ~ 5920540 (+) True G103631
TU139375 lncRNA upstream 162223 5916553 ~ 5916864 (+) True G103630
TU139365 lncRNA upstream 183999 5894819 ~ 5895088 (+) True G103620
XR_005640532.1 lncRNA upstream 215626 5861576 ~ 5863461 (+) True LOC120567187
XR_005640386.1 lncRNA upstream 272846 5805843 ~ 5806241 (+) True LOC120566355
TU139511 lncRNA downstream 259710 6368865 ~ 6369190 (+) True G103734
TU139516 lncRNA downstream 373441 6482596 ~ 6482915 (+) True G103739
TU139519 lncRNA downstream 397711 6506866 ~ 6507167 (+) True G103742
XR_005640368.1 lncRNA downstream 445006 6554161 ~ 6554829 (+) True LOC120566291
TU139521 lncRNA downstream 545817 6654972 ~ 6655228 (+) True G103744
XM_039813688.1 mRNA upstream 1478 6032764 ~ 6077609 (+) False st3gal5
XM_039813686.1 mRNA upstream 1478 6051416 ~ 6077609 (+) True st3gal5
XM_039813687.1 mRNA upstream 2675 6051417 ~ 6076412 (+) False st3gal5
XM_039813215.1 mRNA upstream 50646 5974663 ~ 6028441 (+) True polr1a
XM_039814340.1 mRNA upstream 192321 5884376 ~ 5886766 (+) True LOC120567383
XM_039812603.1 mRNA downstream 1939 6111094 ~ 6123585 (+) False cenpu
XM_039812601.1 mRNA downstream 2596 6111751 ~ 6123585 (+) True cenpu
XM_039812602.1 mRNA downstream 2596 6111751 ~ 6123585 (+) False cenpu
XM_039813663.1 mRNA downstream 47324 6156479 ~ 6168532 (+) True LOC120566943
XM_039813594.1 mRNA downstream 68843 6177998 ~ 6190563 (+) True irf2
XR_005640592.1 other upstream 78174 6000777 ~ 6000913 (+) True LOC120567500
XR_005640588.1 other upstream 83873 5995078 ~ 5995214 (+) True LOC120567495
XR_005640586.1 other upstream 88695 5990256 ~ 5990392 (+) True LOC120567493
XR_005640587.1 other upstream 90443 5988508 ~ 5988644 (+) True LOC120567494
TU138992 other upstream 2009473 4068811 ~ 4069614 (+) True G103305
XR_005640485.1 other downstream 68841 6177996 ~ 6188192 (+) False irf2
unassigned_transcript_392 other downstream 400381 6509536 ~ 6509608 (+) True trnaf-gaa_9
unassigned_transcript_393 other downstream 402031 6511186 ~ 6511258 (+) True trnaf-gaa_10
unassigned_transcript_394 other downstream 408480 6517635 ~ 6517707 (+) True trnaf-gaa_11
unassigned_transcript_395 other downstream 409086 6518241 ~ 6518313 (+) True trnaf-gaa_12

Expression Profile