RNA id: TU186005


Basic Information

Item Value
RNA id TU186005
length 478
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G138116
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 32715990 ~ 32718124 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttgtattttagattcttcaaagtagccaccctttgctttttttattaataaggaaaaacttccactaatgaaccctgacaaagcacacctgtgaaggtaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagttatcaaaaaagcaaagggtggctactttgaagaatctaaaatataagacatgttttcagttatttcacacttttttgttaagtacatgattccatatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaataaaaaggaaacacattgaatgagaaggtgtgtccaaacttttggcctgtac

Function

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006323 DNA packaging biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185998 lncRNA upstream 8041 32706842 ~ 32707949 (+) True G138111
TU185988 lncRNA upstream 16681 32641641 ~ 32699309 (+) False G138105
TU186006 lncRNA downstream 14686 32732810 ~ 32740022 (+) True G138117
TU186008 lncRNA downstream 20121 32738245 ~ 32857673 (+) True G138118
XR_005641194.1 lncRNA downstream 73703 32791827 ~ 32853611 (+) True LOC120571116
TU186014 lncRNA downstream 100019 32818143 ~ 32835293 (+) True G138124
TU186037 lncRNA downstream 116746 32834870 ~ 32987740 (+) True G138135
XM_039819799.1 mRNA upstream 128548 32573800 ~ 32587442 (+) True LOC120571112
XM_039819800.1 mRNA upstream 129186 32573800 ~ 32586804 (+) False LOC120571112
XM_039819805.1 mRNA upstream 158591 32538277 ~ 32557399 (+) False LOC120571115
XM_039819797.1 mRNA upstream 186108 32516456 ~ 32529882 (+) True LOC120571110
XM_039819798.1 mRNA upstream 203364 32483050 ~ 32512626 (+) True LOC120571111
XM_039819634.1 mRNA downstream 26465 32744589 ~ 32761985 (+) True LOC120570938
XM_039821249.1 mRNA downstream 438697 33156821 ~ 33160537 (+) True LOC120572046
XM_039821251.1 mRNA downstream 444252 33162376 ~ 33200180 (+) True LOC120572048
XM_039821253.1 mRNA downstream 444252 33162376 ~ 33183468 (+) False LOC120572048
XM_039821250.1 mRNA downstream 444252 33162376 ~ 33177268 (+) False LOC120572048
TU185992 other upstream 19721 32641641 ~ 32696269 (+) True G138105
XR_005641193.1 other upstream 149828 32538277 ~ 32566162 (+) True LOC120571115
TU185946 other upstream 211014 32430410 ~ 32504976 (+) True G138076
XR_005641241.1 other upstream 712310 31995001 ~ 32003680 (+) True LOC120571558
TU185635 other upstream 1073527 31617595 ~ 31642463 (+) False LOC120570800
TU186021 other downstream 265638 32983762 ~ 32990790 (+) True G138130
TU186022 other downstream 265638 32983762 ~ 32990790 (+) False G138130
TU186023 other downstream 265638 32983762 ~ 32990790 (+) False G138130
XR_005641346.1 other downstream 444252 33162376 ~ 33177268 (+) False LOC120572048
TU186089 other downstream 444292 33162416 ~ 33195323 (+) True G138177

Expression Profile