RNA id: XM_039821249.1


Basic Information

Item Value
RNA id XM_039821249.1
length 1080
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120572046
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 33156821 ~ 33160537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGCTGCTACTTCCTTAATACTTGGTgttgaagagagagacagaaagcatCGGATTAGAGTACAAAGTTATATTTaggatttagaaaaacaaactaCAGCAAAGCACCGGCTGTTAGAGGAATACAACAGGGTGTACTGCTACAGGAAATTGTGAAAAAGCTGCCCAGACTCGTCAGTTGTCTCagcatttaaaatgtcttccaacATTTACGAAGACCCAAATTTGTCTATGAATGTGAAATACAGCAAAGGagccagagaggacagaggagagcgAGTGGAGAGAGTAATCGACATCTACGAGAGTGTGGACACGTCCACAAACCGTTGTGTTCCAACACAGCGCGGAGGACCACACACTCAAAATCATCCTCCAGCTGTGCAAAGAAACCCTTTCAGAGCAGCTGCGCTGGTTCTGGGTTTACTCTGCCTCCTGCTGGTAGCGGGAGTTACTGTCCTGGCCAATCAATGTGACCAGCTGCAGACCAGTAATAAGGAGCTGCAGACCAGTTATAAGAAGCTGCAGACCAGTTATAACAACCTGAGCAACAGTTTCTGCCAGGAGGCAACAAAGCAGACACACGGATGGACGAGATACCAGTGCAGTTGTTACTACAAATCTATTAAGATGAAAAACTGGACAGAGAGCAGGAAAGACTGTCAGAACAGAGGAGCAGATCTGGtgataataaaaagcaaagaagAAAATGATTTCGTCAGTGAGCTGAATAAACCTGAAacttcctggatcggtctgcaGTCAGTGTCAACAAACGATTGGAATGATGAATGGAAATGGGTGGACGAATCAACACTATCATATATGTCCTGGCAGAAAGACGTGAATATGAACCCCGTGAAGGGGGCCACAGCATATATGGATCTGGATGGAAATTGGAACCATTCCAATAATGGATTGAAAAGATGGATTTGTGAGAAACATATTTATAAGGTCTGATATGTAACTGTTATGTAATGGGTTTGAATCTTGACAAGGacatttcttcttctcttaTCCATTGGTACTTGTTGCCCTCCCTTAAAACTACATAATAAAGGCAAACATGAGACAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186082 lncRNA upstream 12207 33143394 ~ 33144614 (+) False G138174
TU186083 lncRNA upstream 12207 33143394 ~ 33144614 (+) True G138174
TU186085 lncRNA upstream 12733 33143394 ~ 33144088 (+) False G138174
TU186073 lncRNA upstream 68373 33087859 ~ 33088448 (+) True G138167
TU186035 lncRNA upstream 90005 33011581 ~ 33066816 (+) True G138133
XR_005641349.1 lncRNA downstream 7685 33168222 ~ 33169576 (+) True LOC120572087
XR_005641350.1 lncRNA downstream 7685 33168222 ~ 33169576 (+) False LOC120572087
TU186260 lncRNA downstream 248209 33408746 ~ 33417971 (+) False G138303
TU186261 lncRNA downstream 248209 33408746 ~ 33409866 (+) False G138303
TU186262 lncRNA downstream 248209 33408746 ~ 33409866 (+) False G138303
XM_039819634.1 mRNA upstream 394836 32744589 ~ 32761985 (+) True LOC120570938
XM_039819790.1 mRNA upstream 425267 32710841 ~ 32731554 (+) True LOC120571107
XM_039819799.1 mRNA upstream 569379 32573800 ~ 32587442 (+) True LOC120571112
XM_039819800.1 mRNA upstream 570017 32573800 ~ 32586804 (+) False LOC120571112
XM_039819805.1 mRNA upstream 599422 32538277 ~ 32557399 (+) False LOC120571115
XM_039821251.1 mRNA downstream 1839 33162376 ~ 33200180 (+) True LOC120572048
XM_039821253.1 mRNA downstream 1839 33162376 ~ 33183468 (+) False LOC120572048
XM_039821250.1 mRNA downstream 1839 33162376 ~ 33177268 (+) False LOC120572048
XM_039821254.1 mRNA downstream 1839 33162376 ~ 33167357 (+) False LOC120572048
XM_039821256.1 mRNA downstream 30844 33191381 ~ 33195543 (+) True LOC120572051
TU186021 other upstream 166031 32983762 ~ 32990790 (+) True G138130
TU186022 other upstream 166031 32983762 ~ 32990790 (+) False G138130
TU186023 other upstream 166031 32983762 ~ 32990790 (+) False G138130
TU185992 other upstream 460552 32641641 ~ 32696269 (+) True G138105
XR_005641193.1 other upstream 590659 32538277 ~ 32566162 (+) True LOC120571115
XR_005641346.1 other downstream 1839 33162376 ~ 33177268 (+) False LOC120572048
TU186089 other downstream 1879 33162416 ~ 33195323 (+) True G138177
unassigned_transcript_628 other downstream 358228 33518765 ~ 33519270 (+) True LOC120570940
unassigned_transcript_629 other downstream 370268 33530805 ~ 33531621 (+) True LOC120572068
unassigned_transcript_631 other downstream 374120 33534657 ~ 33535271 (+) True LOC120572063

Expression Profile