RNA id: XR_005641349.1


Basic Information

Item Value
RNA id XR_005641349.1
length 225
lncRNA type intronic
GC content 0.45
exon number 3
gene id LOC120572087
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 33168222 ~ 33169576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acAACGCAGCAAGGCGGAAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGCAATCAGGCTCACTGGACTTActTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTCCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGaagactgagaagaaACTGACCCTCATTAGAAAGATGATGGAGACCACATTTCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186082 lncRNA upstream 23608 33143394 ~ 33144614 (+) False G138174
TU186083 lncRNA upstream 23608 33143394 ~ 33144614 (+) True G138174
TU186085 lncRNA upstream 24134 33143394 ~ 33144088 (+) False G138174
TU186073 lncRNA upstream 79774 33087859 ~ 33088448 (+) True G138167
TU186035 lncRNA upstream 101406 33011581 ~ 33066816 (+) True G138133
TU186260 lncRNA downstream 239170 33408746 ~ 33417971 (+) False G138303
TU186261 lncRNA downstream 239170 33408746 ~ 33409866 (+) False G138303
TU186262 lncRNA downstream 239170 33408746 ~ 33409866 (+) False G138303
TU186263 lncRNA downstream 239170 33408746 ~ 33409866 (+) True G138303
TU186264 lncRNA downstream 239170 33408746 ~ 33409866 (+) False G138303
XM_039821254.1 mRNA upstream 865 33162376 ~ 33167357 (+) False LOC120572048
XM_039821249.1 mRNA upstream 7685 33156821 ~ 33160537 (+) True LOC120572046
XM_039819634.1 mRNA upstream 406237 32744589 ~ 32761985 (+) True LOC120570938
XM_039819790.1 mRNA upstream 436668 32710841 ~ 32731554 (+) True LOC120571107
XM_039819799.1 mRNA upstream 580780 32573800 ~ 32587442 (+) True LOC120571112
XM_039821256.1 mRNA downstream 21805 33191381 ~ 33195543 (+) True LOC120572051
XM_039821239.1 mRNA downstream 641789 33811365 ~ 33819867 (+) True LOC120572040
XM_039821240.1 mRNA downstream 656254 33825830 ~ 33850928 (+) True LOC120572041
XM_039821242.1 mRNA downstream 656254 33825830 ~ 33850928 (+) False LOC120572041
XM_039821241.1 mRNA downstream 656254 33825830 ~ 33850928 (+) False LOC120572041
TU186021 other upstream 177432 32983762 ~ 32990790 (+) True G138130
TU186022 other upstream 177432 32983762 ~ 32990790 (+) False G138130
TU186023 other upstream 177432 32983762 ~ 32990790 (+) False G138130
TU185992 other upstream 471953 32641641 ~ 32696269 (+) True G138105
XR_005641193.1 other upstream 602060 32538277 ~ 32566162 (+) True LOC120571115
unassigned_transcript_628 other downstream 349189 33518765 ~ 33519270 (+) True LOC120570940
unassigned_transcript_629 other downstream 361229 33530805 ~ 33531621 (+) True LOC120572068
unassigned_transcript_631 other downstream 365081 33534657 ~ 33535271 (+) True LOC120572063
TU186312 other downstream 369539 33539115 ~ 33544251 (+) False G138322
unassigned_transcript_632 other downstream 373892 33543468 ~ 33544242 (+) True LOC120572072