RNA id: XM_039821590.1


Basic Information

Item Value
RNA id XM_039821590.1
length 2787
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC120572318
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38828560 ~ 38866782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGGAGAACAGGAAGCAGGGgaggtgtgttttcagtgtgtgtgtgtgtttgtatgggaACCGTAGACGGTGTTTTTCTTCACGGAAGGAGAGCAGAGGAAGGCTCAGCgtcttgaaaaaaaattaaaaaaaaataccccgACAGAAGTAGCCTACGCACCGGAATATCACAGAACAAGAGCGTGGAATAAACGGGGAATAAACGTGCGCAGAACAGGAAGAAAGGAGCAAAAACCGCGCATCTgttcgtgtgtgcgtgtgtgtgtgtgtgtgtgagagtgagtgagagagagacagggacagAAACATGCGACCGTGTTCGTCTTCCTgagtggaaaaataaataaatacctgcAGCAGCAACCTGAAGCAGCGGACCTGAAAGAGGACAGGCACCGGTGCGTGCGGGCGGGCTGGGGCGCGCACGCGGACACGCGGACATGGCCCACGTAGGCAACGGAGCGACtgcagaggaggagGACTGTTTTGAAGATGCCTACGACCGGATACCTGcggcTTGTCAGATGGACCTGCAGACAGCCATCCAGGAGACTCAGTGTGCTCTCAATCTCGTTCTCAACAACAAGTTCTCTGAAGCCCTGGACCTCCTCAAACCATGgtggagGGACAGCATGTACCACGCGTTGGGCTACAGCAGCATCCTGGTGATGCAGGCCACCATGACCTTCGAGCACAGAGACATACAGGCTGCCATGGCGACCATCAAGGAGGCGTTACAAACCTGTCAGAGGTTCAGGAAGAAGAACTCTGTGGTCGGCTCTCTGTCCAGTCTGATCAGCAAGCAGTCCAAACTGCAGGAAGAGGAGATGCACGCAGAGATCTGCTACGCCGAGTGTCTGCTGCAGAAGGCCACGCTGACGTTTGTacagGATGAGAATATGATCAGCTTTATCAAAGGAGGCATCAAGATTCGAACGAGCTACCAAATCTACAAGGATTGTCAGAACGTGCTGAATGTCAGTCAGGACCTTGCCGCCCAATCAGACGCGTTCAGACAGTTTGAAGGCGGAGTCAAGCTGGGCATCGGATCCTTCAACCTGatGTTGTCCCTCCTCCCTCAGAGGATTTTGAGGTTGTTGGAGGTCATCGGATTCTCAGGAAACAGGgggTTTGGTTTGTCTCAGTTGAGAGAGGGTGCATCCAGTCACAGTTTGCGGGCCATCCTCTGCTCCCTGACTCTGCTCTTCTACCGCACATATGTGTCCCTGATACTCGGAACTGGAGAGGGGAACCTGGTGGAGGCTGAAGCTCTGCTGGAGCCGTACCAACAGAAATACCCCAAAggCTCCATTATTCTCTTCTACTCTGCTCGCATCTCCACGCTGCGAGGACACTTTGAGAAGGCCCGGGCGCGGTACGAGGAGTGCATCAGCAGCCAGCAGGAGTGGAAGCAGATCCACCATCTTTGTTTCTGGGAGCTGATGTGGACTCACTCGTACCAGCAGGAGTGGGGGCAGGCATACCGCTATGCCGACCTGCTGTGCAAGGAGAGCCGCTGGTCCAAGGCTATCTACGTTTACCAGAAGGCGGCCATCCTCAGTATGATGTCTGAGAAGGATGTGAAGGAGACGGGGGAGGACATCACAGAGCTCTTCAGGCAGGTGGAGGGGCTAAAACAGCGCCTGGCAGGGAAGTCTATCCCGACGGAGAAATTTGCAGTGAGGAAGTCCAGACGCTACAAGGCTGCCAACCCCGTCCCGCTGGTCATCCCCGCACTGGAAATGATGTACGTTTGGAACGGTTTCACCATTGTCGGGAAGAGAGCTGACAGCACCGAGGCCCTGCTGGTAACCATAGAGACGGCTGAGGAACAGCTTCGCAACGATCCCAACCCATCAGAGTTTCATCCAGATGACAGCTGCCTGGTCCAGATGTTGAAGggcctctgtctgaaacacctGGGCAGGTTATTGCAGGCCGAGCTCTGCTTCACACAGGTCCTGTCCAGCGAGAGTCGCATCAGATACGATCACTACTTGATTCCCTTCACTCTCTACGAGTTGGGTCTGCTATATAAAGAACAGGGAGACTTCACCAAGGCCACCGCATACATCGAAAATGCCAAGGCGAATTACAAGGACTACTCCATGGAGTCCAGACTGCACTTCAGGATCCACGCGGCCCTCAGCAGCCTCAAAGGATCACCCGGTGGCACCCCATAATACTCGGAAACGACTCAGACTGCAGCTGGAAACAACAGCGTGTGAATCATGAATCCAGGGGTTGAAAGAACCACCCCTGAATGAAGAAGCttaggtgtgtctgtgttgatGACACACTGGCTCTCCTCTTATTCTCCATCGCTTGCaactttatattatattttatgtttttttcttatttattgttttgtattgtgtgGAAAGATAAGATTATTTACTTCTCAAACAGGCTCGGGCTTCCCGTCAGCGTCTGCCAGCTAATACTGAGATTTGATGTGTAGATGCAGCGCCATGGTTCAACGTCAAATGTCAAGTTAATCACCACACTAATAGTTAAAGGGTCATTTTGTGTGGGGGGGTTTTCAACCTATCtttccccatgcatttgtgtctaaatgactgatgtgatctttgaaactggtccagtattgagcgagaacgctgtaaccagcagccgCAAACTGGGCTGCAACGTACTGTAACCCTAAAGAACAATTGTtagcatccactaaaagttctgtttttgccgctgacagactcagattattattctaagtgtctgacaacattatggaaaggatctgacagagatagaccttttagt

Function

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203282 lncRNA downstream 1835 38777613 ~ 38826725 (-) True G150232
TU203268 lncRNA downstream 36697 38765217 ~ 38791863 (-) True G150220
TU203250 lncRNA downstream 128040 38699827 ~ 38700520 (-) True G150203
TU203237 lncRNA downstream 133724 38691845 ~ 38694836 (-) True G150194
TU203235 lncRNA downstream 136784 38690188 ~ 38691776 (-) True G150193
TU203299 lncRNA upstream 20017 38886799 ~ 38887329 (-) True G150246
TU203307 lncRNA upstream 68605 38935387 ~ 38936032 (-) True G150251
TU203311 lncRNA upstream 85872 38952654 ~ 38958522 (-) True G150253
TU203321 lncRNA upstream 233919 39100701 ~ 39102355 (-) True G150262
XM_039821589.1 mRNA downstream 11878 38793562 ~ 38816682 (-) True cfi
XM_039821436.1 mRNA downstream 85170 38735184 ~ 38743390 (-) True LOC120572225
XM_039821286.1 mRNA downstream 156747 38645709 ~ 38671813 (-) False lratb.1
XM_039821973.1 mRNA downstream 192984 38628024 ~ 38635576 (-) False LOC120572655
XM_039821972.1 mRNA downstream 201256 38606289 ~ 38627304 (-) True LOC120572654
XM_039821975.1 mRNA upstream 15456 38882238 ~ 38889171 (-) True LOC120572656
XM_039821591.1 mRNA upstream 22113 38888895 ~ 38899886 (-) True LOC120572319
XM_039823584.1 mRNA upstream 38070 38904852 ~ 38914929 (-) True wdr55
XM_039823151.1 mRNA upstream 247663 39114445 ~ 39124082 (-) True LOC120573427
TU203233 other downstream 138967 38611655 ~ 38689593 (-) True G150192
TU203245 other downstream 160589 38644566 ~ 38667971 (-) True lratb.1
TU203220 other downstream 192967 38627757 ~ 38635593 (-) True LOC120572655
TU203219 other downstream 195508 38561269 ~ 38633052 (-) False LOC120572655
TU203204 other downstream 287390 38487968 ~ 38541170 (-) False LOC120572653

Expression Profile