RNA id: XM_039823365.1


Basic Information

Item Value
RNA id XM_039823365.1
length 3841
RNA type mRNA
GC content 0.49
exon number 16
gene id mtm1
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5480379 ~ 5520361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACAACCAGCCAATCCCCGCCATGACAGTCCGGCACGTGACGTAGGGTAAGTTCCTGCTGTGGCTTAAGGGAAACATATCGACATTCAGCCACGGGAGAATCGCACTTTGCGGCCTGTGGAAGCCCCCCTCCCTGAGCGATGGCCTCACCAGTCTCAGTCTACAACTCCAACGCCCTGGACACCCACATCTCCAGTacctCCAGAGAGTCCCTGAAGATGGAGTTGTTAGCGGATGTGTCTCTGCTGCCAGGGGAGGAAAGAATCATCGATAAAGAAACCATGTACATCTGTCCATTCAATGGAGCTGTGAAAGGCAAAGTGTTGATCACCAACTACAGACTGTACTTCAAGAGCTCAGATGCTGATGTGGCGGTGACGCTGGACGTTCCTCTGGGTGCCATCAGCCGGGTGGAGAAGATGGGCGGGGCGTCGAGCAGAGGAGAAAACTCCTACGGCTTGGATAtcacatgcaagGACATGAGGAACCTGAGGTTTGCCTTGAAGCAGGAAGGTCACAGCAGACGAGATATCTTCGAGCTCCTCTTCAAATACGCCTTCCCCCTCTCACACGGTCTGCCACTGTTTGCATACGTGACTCAGGAGAAGTACGCGGAGAACGGCTGGAGCATCTACAAACCCGTAGAAGAGTTCAGACGCCAGGGCTTACCGAATAACAAGTGGCGTATCACCTTCATCAATAAGAAATACGAGCTGTGTGACACCTACCCCACCGTGTTGGCCGTACCCTTTAAAAGTAAAGAGGAGGACCTGAGCAGAGTGGCTGCCTTCAGGTCCAGAGGACGCATACCGGTTCTCTCCTGGATCCACCGGGAGAACCAGGCCGTGATCTGTCGCTGCAGCCAGCCTCTTGTTGGCATGTCTGGGAAAAGAAACAAGGACGACGAGCGCTACCTGGAACTGATCCGGGAGGCAAACGACACCCCCAAGCTCACCATCTACGACGCTCGGCCCAGCGTCAACGCTGTGGCCAACAAGGCCACAGGAGGAGGCTACGAGGGTGACGAGTACCAGAACGCAGAGCTCGTCTTCCTGGACATCCAGAATATCCACGTCATGAGGGAATCCCTGAAGAAACTCAAAGACATCGTCTACCCCAATGTGGAGGAATCCCATTGGCTGTCCAGTCTGGAGTCTACACACTGGCTAGAACATGTTAAGcTGGTGTTGTCGGGAGCCATCCAAGTAGCAGACAAGGTTTCCAGTGGGAACTCTGTGGTGATTCACTGCAGCGACGGCTGGGACCGCACCGCACAGCTCAGCTCTCTGGCCATGCTGATGCTGGACAGTCACTACCGCACGCTCCGAGGATTCCAGGTGCTGATTGAGAAGGAATGGATCAGCTTTGGCCACAAGTTTGCCTCAaggATAGGTCACGGTGACAAGAACCATGCAGATCAGGACCGATCCCCCATCTTTGTTCAGTTCATCGACTGCGTATGGCAGATGACCAAACAGTTTCCTACAGCGTTTGAGTTTAACGAGCGCCTCCTGCTGACCATCCTGGATCACCTCTACAGCTGCTGCTTCGGGACCTTCCTCTACAACTGCGAGAGTATGCGAGACCAGCAAGAGGTGAGGTTGAAAACGGTGTCTCTGTGGTCCCTGGTCAACAGTAAGATGGAGATGTATTTAAACCCCTTCTACACCCCTGAGTCGGGCAGGGTCCTCTACCCCGTCGCCAGCATGCGCCACCTAGAGCTGTGGGTAACATACTACATCCGCTGGAACCCTCGCATACGGCATCAGcagCAGAGTCCGGTGGAGCAGCGCTACAAGGAGCTGTTGGCGCTCCGAGAAGAGTACCTGAAGAAGCTGGAGGCGCTGGAGCTGTCTGactcctccccttcctcccgTTTGGCTAACACCCCCAACACCCCCACCGCCTCCACACCGCCACAGCAATACACACAACTGCAAACTCCGCTCTGAGGGctcatgagacacacacacacacgcacactctcaAATACACCTGTTGACTTGCACTTATGTCCTCTTCACTCTGATTTCTGTCAGTCTCTAACACGCGCAGGGAATTAATGAGAATTGTGCAGTTCTAACTGTTGATAACAAAGAATGCTAATCAGATTTAGATTTGATAGGGTCGTTCTAACACCATAGTGGTGACAATGGTGATTTATGCAATATGTCACAGTACAgccttctacacacacacacacacacacacacacacacacacacacacacacaacacacacgcactcgcCATACAAGGAAGCCTTAAAGACATTCAGTGGCTTTCAGTCCAAGGGCTTGAACACACAGGACACCCAGTGGATGCGTAACGGCTTTCACACAGGCATTCCTCTGTACGCCCTAATCTGATTTGACAGAAACCGCCACACAACAATATTTAGGTATACTATCTAGTATAGGTCCAGTCAGGAGAAAAATACAGACAATACGTTTTCTTGGAAACTAAAACCAGTTCAAAGTTTGGATGTCAGAACACTGCTAGGTGTCAGCCCGGCTCCTgcctacgtcctgctacgcaaGCGTTGGTGTCCTGTGTGAACACGGCGAAATCGAGACAGACAGTTCTCACTTCTCCCACTTCTTCCTTCTTGCTGCACTGCTTCTGAGTGTCGCCTCATCTTCCCTTAAGGAATCGATTAGAGCTACCACGGAGCTCACGCGGCCGAGTCGGAGGCTCTGAGCTGCAGCGGTGAACGCCACCGTATGCGTCCAGCTAAGTGTATATATCAAGTGTGTCAGATTTGGATGGATTGATGCGGAATTTTTTGCGTATCACCCGAGGAGGAAACCTAGAGCCGTCTGGGTCACGTGTGTTTTGCCACCGCTTTCAGCTACGCTCCCCTAAGCAGAATTTCCCAGCTCTTCCTAAGCTACGGCGCCGAGAGCAAATGCAGTTCTCGCCAACTGGCAGAGTTCAGTTAGACGTAATCAGTAATTACCTTTTTATGAATGCAGCTTTGATAGGGtttgaaatatattttgggTGCTCAAGATATTCTAGGGACATGAAGTGGTGCTGGCCTCTGATCCCGGATCACCTCTTGTGCTTCTATGTTCTCGCTAAACACAGACCGTGGATGAAGAAACCAGCCTGGTCCATGATAGCCTTACCATGCCACGCCAAGATGATTGGAACCAGCACACCGTTTTATGGACAGTGAGCAGAAATCAACCAGTTAGCTACTACTTAGCTACTGTTAGCTATTACTTCCTCTGAAGTACACTATTTGTAATTCTGATATTCTTTCCATCCCACCACTGAAAAGTCCCATGTGAAAATGCATGTGATCTCATAGCACATGTGCCTTTTGGACAGGTGTTTTCTCCCCCTCATTGTAATTGGATATCATGTAGGTCAGTTTTTACATACAAAGGAAAGTTTTAGGCAATAAATAGTCTATTTTTCAGTTATCTAATTGGTTTACTTACTTTGGACTTGTTTACGACTACTAGCTTGGTTGTCTGATGTTTCTGCCCAATTACACTCCAGATTACAGCTTTATGTAGCAAACGGGCTGTTGATGTCTCCAAAAAACATGTAATTATAACTATAGGAATGATGGGGAAAGCTATTAAGAAATAAGGTGAAGTTATGGGAAttaatcttgattttatgtggAAGtagcaaataaaaatgtaaatttcacATTGGAAATTCTATGGAAGACAATGTTTGCCAAAACAAATTTGGTCAATTGTTGAGGaatgtcaaaaatataaaaattatttatatgTCAAAATGATAGGGTACTAGGTTTAAATGATGACATTAAGTCAAAGTTATaagatttagttttttatgtgaatagtttttttttttt

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K01108 MTM1; myotubularin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190584 lncRNA upstream 66020 5414141 ~ 5414359 (+) True G141305
TU190583 lncRNA upstream 66816 5413274 ~ 5413563 (+) True G141304
TU190522 lncRNA upstream 275521 5204647 ~ 5204858 (+) True G141258
TU190495 lncRNA upstream 364001 5109823 ~ 5116378 (+) True G141237
TU190489 lncRNA upstream 395983 5084107 ~ 5084396 (+) True G141231
TU190576 lncRNA downstream 5050 5525411 ~ 5527470 (+) True G141299
TU190577 lncRNA downstream 5050 5525411 ~ 5527470 (+) False G141299
TU190565 lncRNA downstream 39682 5560043 ~ 5568401 (+) True G141295
TU190601 lncRNA downstream 51361 5571722 ~ 5571998 (+) True G141321
TU190602 lncRNA downstream 51801 5572162 ~ 5575064 (+) True G141322
XM_039822977.1 mRNA upstream 281421 5171549 ~ 5198958 (+) True htra3b
XM_039822973.1 mRNA upstream 320671 5123201 ~ 5159708 (+) True LOC120573311
XM_039823339.1 mRNA upstream 532343 4944044 ~ 4948036 (+) True cd248a
XM_039822745.1 mRNA upstream 632208 4834682 ~ 4848171 (+) True rce1a
XM_039821478.1 mRNA upstream 695934 4772175 ~ 4784445 (+) True rab1ba
XM_039823368.1 mRNA downstream 8542 5528903 ~ 5558688 (+) True mtmr1a
XM_039823373.1 mRNA downstream 8542 5528903 ~ 5558688 (+) False mtmr1a
XM_039823369.1 mRNA downstream 8542 5528903 ~ 5558688 (+) False mtmr1a
XM_039823370.1 mRNA downstream 8542 5528903 ~ 5558688 (+) False mtmr1a
XM_039823371.1 mRNA downstream 8542 5528903 ~ 5558688 (+) False mtmr1a
TU190258 other upstream 992772 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 1035432 4440638 ~ 4444947 (+) True G141060
TU190185 other upstream 1164841 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 1164841 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 2175748 3256551 ~ 3304631 (+) False mllt3
unassigned_transcript_682 other downstream 508279 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 716642 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 1068590 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 2196253 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 2197659 7718020 ~ 7721637 (+) False LOC120573538

Expression Profile