RNA id: XM_039823368.1


Basic Information

Item Value
RNA id XM_039823368.1
length 3253
RNA type mRNA
GC content 0.52
exon number 20
gene id mtmr1a
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5528903 ~ 5558688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGTTGTAAAAAGGCGGGGCTAGAGCTACAGTGCGAGGAAGAGATGCGGTGGTGAGAGGCAGTCCGGAGGAAGCACAAATAACCAAATGACAGGAAGCGTTCAtactcatttttctttttacagtgaGCCTCGAGCCCTATTGCAGAATAAAGAGGCAGGCGCGCGCGCCGAGGGCGGACATTGGAATTAAACCAACTGGTTTGATTTCATCCGCATCCTCATTATCAGAGGAAGTCGTCCGCCATCCGCCCCTACAGTAGTGACCTAGAAAGTAAACAGTTGTCTGGCAGATGGAGAAACAGGCCGGAGCTACCGGGGCGGCGGACGGAGCAGGCTCGAACAGAAAGCTCTGGGGCTCGCCGACCGGCGCACCAGCCACCGGAGAAACCCTGGACAGTCCAACAGGTTCTCATGTAGAGTGGTGTAAACAGCTGATCGCAGCCACCATCTCCAGTCAGATCTCAGGATCAGTCCCAGCTGATGTCGGGAACAGGGACATCAAGGCTGGGAGAAGACCCGGTTTCATGGTGTCCAAGAGGCTGACTCCCAGGCAAGATTCACAAGATGAAGGTCTTTGTTACCATGGAGAAAGTGATTCTGAGCATCCTTCCAATGCTTTgAACCTTCCAGCGTTGAGATACGGGGCGCAGGTCACAATGTTCCAGAACCAGGTTCCTTTGCTACCAGGAGAGTCCGTCCAGACTACAGtcaAGGATGTGATGTATATCTGTCCATTCAGCGGTCTGGTCAATGGAACCCTGACCATCACAGACTACAAACTCTACTTCACCAGTGCGGAACGGGAGTCTCCGTTCGTTCTGGATGTGAACCTGGGAGTGATCAGCAGACTGGAGACCATCAGTGTTCCCAACCAGGGAGAGAACACCAAAGGCCTGGAGCTGGTCTGCAAGGACATGAGGAGTCCCAGGTTTGCCTATAAGACAGAGGAGAGCCACCCGGACGTGGTGGAGCTGCTGGACAAACACGCCTTCCCCCTCTCACACAGCCTGCCCCTGTTTGCCTTCCTGTACAAGGAGCAGTTTCCTGTGGACGGCTGGAAGGTGTACGACCCGGCAGCAGAGTACAGACGCCAGGGCCTCCCTAATGAGAGCTGGACCATCAGCAAGATGAACAGCACCTATGAGCTGTGTGACACCTATCCCTCCACCCTGGTCATCCCCACCAACATTACAGAAGAAGACATCAAACGGGTGGCTGTGTTTCGAGCCAAGCACCGCATCCCGGTCCTGTCTTGGATTCACCCAGAGTCTCAGGCAACCATCGTACGCTGCAGCCAGCCGCTAGTCGGCCCTTCAGACCGCCGCTGTAAAGAGGATGAACACTACCTCCAAATCATCATGGACGCCAACGCTCAGTCCCACAAGCTGACCATCTTCGACGCCAGGCAGAGCAGTGTAGCAGTCACCAACAAGGCAAAGGATGGAGGGTATGAAAGTGAGAGCTTCTACCAAAACGTGGAGCTGAACTTCCTGGAAATCCCTAATATCCATGTGATGAGGGAGTCTCTGAGGAAGATGAAGGACGTGGTTTATCCCACCATAGATGAAGCCCACTGGCACTCCGCTATCGACCAAACACACTGGCTGGAGTACATACGGCTGTTATTAGCAGGAGCAGCAAAGATAGCTGATAAGCTGGAGTCTGGAAAGACGTCGGTGGTGATTCACTGCAGCGATGGCTGGGACCGCACCGCTCAGCTGAGCTCTCTGGCCATGCTGATGCTGGACAGTCACTACCGCACGCTCCGAGGATTCCAGgttCTGGTGGAGAAGGAGTGGATAAGTTTTGGACACAAGTTTGCTGCTCGCGTGGGTCACGGCGACGAGAACCACGCAAACTCCGAGCGCTCGCCTCTCTTCGTCCAGTTCATCGACTGCGTCTGGCAGATGACTCGACAGTTCCCAGCAGCCTTTGAGTTCAACGAGCTGTTTCTGATCACAGTGCTGGACCACCTCTACAGCTGTCTGTTTGGTACATTCCTGTATAACAGTGAGCAGGAGAGGGCGGCCAAGGAGGTGCAGACCCAGACCGTGTCCCTGTGGTCCTACATCAACAGCCAGCCGGAGGACTTCAGCAACCCCTTCTACGTGGACTACCAGCACCATGTTCTGTATCCGCTGGTTTCCTCCAGACACCTGGAGCTGTGGACCGCCTACTACGCCCGCTGGAACCCCCGCATGAGACCCCAGgtgCCGGTGCACCAGACGCTGAAGGAGCTGCTGATCCTGAGGGCGGAGCTGCAGCGGagggtggaggagctgcagagagACGCCACCTCCCActccctgtcctcctcctcgGAACACTCGCCCTCCCACTCCACAGGAACGCCCCTGCACGGCGCCGTCtgacacgcacgcgcacacacacacacacacacacacacacacacacacacacacacagaaacacacagagaaaaacctGCATGCAAatgcacataaaaacacacacacacacagtttcatgCGTGTTTTAGCCCACTTACTACAAATACTGATGTTTACAATGTGAAGGAGGCTTTACAGAGATTCCtaattttatattaacaatcCTAAATACAGTTTTAGCAAAGAAAAATCGCTGTtaaggtaaaaagaaaaaaaaataataaattatttaaagaaagtatTACAGACTAGCATGACACAGCACCTGtgcttattatttatattatttaaaaaaagaaatactccCCATTCAGAAAGACCAGCTTCCCCGGTACTGTGGGAATCCTCCCACTCCCACTGTGTTTTTGTATGAAGAACTCTCAGGGCTCAGTTGGACCTGTAGTGGTGGAATCCAACCACTGCACGCTCCCTCACaccttctcttcctctactcTGCCAGTGATGGGAACCATTGTTAGGAGTGTAGTTCTCCTCAAAGTCatgagcagaaaaaaagaaaaagtggaaTAACAATGCCACAAAAGGCGCCGTTATCCCTCCGCTGTAAACAGTGCCACCAGCTCCCTGCACCTCCGAACACTGCCTTAAGTctaatttatgcttctgcgtttaATCCACGCCGTAGAGCGCAACAACTGGGATTGGTCCGCTCgcccgtggcttggtagcgttgcatgtCCCCCTAGTCTCGAGCccccgcagaagcataaatcccgCTTTACTGTgcatgttttttctttatttgtataAGAAATAGTCTTTTTATAGTGGTTTCTCTTTCTTTATGTTGCCTTTCCGTACCACTTTGTCCCTTCACTG

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18081 MTMR1_2; myotubularin-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190576 lncRNA upstream 1433 5525411 ~ 5527470 (+) True G141299
TU190577 lncRNA upstream 1433 5525411 ~ 5527470 (+) False G141299
TU190584 lncRNA upstream 114544 5414141 ~ 5414359 (+) True G141305
TU190583 lncRNA upstream 115340 5413274 ~ 5413563 (+) True G141304
TU190522 lncRNA upstream 324045 5204647 ~ 5204858 (+) True G141258
TU190565 lncRNA downstream 1355 5560043 ~ 5568401 (+) True G141295
TU190601 lncRNA downstream 13034 5571722 ~ 5571998 (+) True G141321
TU190602 lncRNA downstream 13474 5572162 ~ 5575064 (+) True G141322
TU190603 lncRNA downstream 16505 5575193 ~ 5576179 (+) True G141323
TU190604 lncRNA downstream 17563 5576251 ~ 5576526 (+) True G141324
XM_039823365.1 mRNA upstream 8542 5480379 ~ 5520361 (+) True mtm1
XM_039823366.1 mRNA upstream 8542 5480379 ~ 5520361 (+) False mtm1
XM_039823367.1 mRNA upstream 8542 5480395 ~ 5520361 (+) False mtm1
XM_039822977.1 mRNA upstream 329945 5171549 ~ 5198958 (+) True htra3b
XM_039822973.1 mRNA upstream 369195 5123201 ~ 5159708 (+) True LOC120573311
XM_039823378.1 mRNA downstream 28544 5587232 ~ 5602513 (+) True arrb2b
XM_039823377.1 mRNA downstream 61752 5620440 ~ 5639857 (+) True pelp1
XM_039823380.1 mRNA downstream 89046 5647734 ~ 5679556 (+) True alox12
XM_039823384.1 mRNA downstream 127530 5686218 ~ 5694499 (+) True zgc:92664
XM_039823325.1 mRNA downstream 206380 5765068 ~ 5769896 (+) True LOC120573536
TU190258 other upstream 1041296 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 1083956 4440638 ~ 4444947 (+) True G141060
TU190185 other upstream 1213365 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 1213365 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 2224272 3256551 ~ 3304631 (+) False mllt3
unassigned_transcript_682 other downstream 469952 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 678315 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 1030263 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 2157926 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 2159332 7718020 ~ 7721637 (+) False LOC120573538

Expression Profile