RNA id: XM_039826222.1


Basic Information

Item Value
RNA id XM_039826222.1
length 2124
RNA type mRNA
GC content 0.50
exon number 7
gene id angptl6
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16621826 ~ 16626733 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATCAGATAGTTTGTAATTAGCTCCCTCTTCAGAGATCCTGAGACAGAACCTCCGGACAAGAAGAGGTAGTCTAGCTGCTGACAAAACTTGGGTGTcatacgttttttttcttcttaagaTTCATTCGTGACCCATATTTCTCTGCCTTCATCTTCACTTCAACATTTTACAGAGGGCCACAGACAACTTTGATTTGGGAAGAAGCGGCTTGTTTATGTGACTCTTCCTGATCCTTGAACATGTGAATTTTGAAAAGTCTATTTTACATGTGTGCACCCTGGGAGCTGCAGTTATACACACTGGAGGAGAACAAAGACGTCCTGAACACTTTTCAGCTGCTACGGCAAGGTGTCATCAGAAGTTTAACACATTCATGGAGAAGACACTGACAATAGGTCTGACTCTTTTCTTAACACTCTGTGTGGACGTACCAGGAGCTGTAGGACGGAAGGAGGGGGCTCATGGCGAGAACACTCAGAAACGTTCATCACGATCTTCAGATACAAAAGGAGGCCGTTGCTCCTACACTTTCATTGTTCCACAGCAAAAACTGACAGGTGCGCTGTGTTTGAACACGCAGTCTGCTTCTACCAACCAGTCGGAGGTGGCGGCGCTGCGGGCGGAGCTCAGACGgcagcaggagcagctggaGAAGCTCCGGGGCCTACTGGAGCGGGAGGGGTCACTTGCCACCGAGGTAAGAGCCCTGCGCAAAGAGAGTAGCAGCATGAATTCTCgcattgcccagctctatgcCCAGCTGCTACATGAAGTCATACACAAGAAAGACCAGGCTTTGGAGCAGCAAAGGGTGGAGAACCTCCTGCTAAACGCTACAACACAGGCGCTGCAGGTGTCCAGTAACTACAGGGAGCTGGAGAAGAAATATGGAGCCCTCACCTCCATGATGAGCTCCCAGAACCAGTTTATTGCTCGTCTGGAGAAGCAGTGCCAGTGCAGGGACTCCACACAGGCCTCTCTGGTGACGACTGAACCACCCAAAAGCCAGCCTAATGTGCATCCTAATTACAGCTCTGAAGCCACCGAAATGACCAATGATGTTCAAAGAGACCAAAGTGCTCTTCCACCACAGCAGGGAAAAACTATTCCTTCCCTCCCCACCACTCCAGCCAACACCACAGACCCTCCTTTCAGTAGTTTCCCTGTCACAAAGACTCCAGGGCCTTGGCGGGACTGTCAGCATGTGCTGGAATCAGGTGAGACCACCAGCGGGATCTACCTGCTTCGTCCCCAGAGTGCCAACCGCCTCCTGCAGGCCTGGTGCGAGCAGAGTCAGGCTCAGGGAGGGTGGACGGTCATCCAGAGGAGACAGGATGGCTCGGTCAACTTCTTCAGGACTTGGGAGCAGTATAAGCAAGGCTTTGGGAACCTAGATGGAGAGTACTGGCTTGGCCTGGAACACCTCTactggctgactaaacaggcCCAATATAAGCTACGGGTGGCTCTGGAGGACTGGCAGGGCCGGCAGGTGTTTGCTGAGTATGACAGCTTTCACCTGGAACCGGAGAGCGATTGGTACCGACTGCGGTTAGGACAATACCACGGCAACGCAGGGGACTCCCTCTCATGGCACAACAACAAGGCCTTCACCACTCTGGATCGAGACAAAGATGGCTATACAGGCAACTGCGCTCATTTTCAAAAAGGAGGCTGGTGGTACCACATGTGTGCACACTCCAATCTAAACGGTGTGTGGTATCGGGGTGGACACTATCGCAGCCGCTACCAGGATGGGGTCTACTGGGCAGAGTTCCATGGAGGGTCCTACTCTCTCAAACGAGTTTCCATGATGATCAAACCCACATAACATAGTTGCATTATGGACATGTAAGAAAGAAACGTAATGATGAACTGATGCAGACTTAAAGAATATGTTTCAGTGTTATCCCTGTACAGTGTTGAGCCAGTAAAAAGGGTTTCTACATGTTGACTAGAGGCCAGTCAGTAACGTGAGTATAGACTGTGAATCATTGGATAATGACTAACATGTACTGCGTTGACATGTCATTCCTCTGTTGTGCAATTTCCTGTCAAAATGAGATGTTTTCCAATTTGCAATgtacaaatgtttaaaataaaaaaataaaatgatgccAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210807 lncRNA downstream 254974 16366002 ~ 16366852 (-) True G155532
TU210786 lncRNA downstream 321065 16300547 ~ 16300761 (-) True G155512
TU210781 lncRNA downstream 340258 16280383 ~ 16281568 (-) True G155508
TU210780 lncRNA downstream 341602 16279491 ~ 16280224 (-) True G155507
TU210771 lncRNA downstream 359796 16259819 ~ 16262030 (-) True G155500
TU210927 lncRNA upstream 77802 16704535 ~ 16725040 (-) True G155619
TU210945 lncRNA upstream 105608 16732341 ~ 16733171 (-) True G155637
TU210956 lncRNA upstream 114679 16741412 ~ 16742961 (-) True G155644
TU210976 lncRNA upstream 140700 16767433 ~ 16769938 (-) True G155659
TU211027 lncRNA upstream 207633 16834366 ~ 16836389 (-) True G155693
XM_039826220.1 mRNA downstream 124 16616403 ~ 16621702 (-) True icam5
XM_039825271.1 mRNA downstream 5970 16599258 ~ 16615856 (-) True trip10a
XM_039825838.1 mRNA downstream 181985 16433623 ~ 16439841 (-) True rdh8a
XM_039824838.1 mRNA downstream 224340 16368606 ~ 16397486 (-) True notch3
XM_039824922.1 mRNA downstream 272917 16346378 ~ 16348909 (-) True soul5
XM_039825885.1 mRNA upstream 16458 16643191 ~ 16655959 (-) False dnmt1
XM_039825884.1 mRNA upstream 16458 16643191 ~ 16655959 (-) True dnmt1
XM_039825886.1 mRNA upstream 31182 16657915 ~ 16676439 (-) True s1pr2
XM_039826143.1 mRNA upstream 213699 16840432 ~ 16856848 (-) False elavl3
XM_039826146.1 mRNA upstream 213699 16840432 ~ 16856846 (-) False elavl3
TU210768 other downstream 362801 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 376495 16230784 ~ 16245331 (-) False LOC120574432
XR_005641873.1 other downstream 465759 16153787 ~ 16156067 (-) False LOC120574545
TU211128 other upstream 406316 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 788792 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 1119853 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1393278 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1726028 18352761 ~ 18352844 (-) True LOC120575519

Expression Profile