RNA id: XM_039823773.1


Basic Information

Item Value
RNA id XM_039823773.1
length 765
RNA type mRNA
GC content 0.42
exon number 5
gene id pla2g10
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17736979 ~ 17741144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGTGGAGTTCAGCCGCATGCATGCCATGACTGCGTTTTACCGAATACTTCTCCTGTTATCTGTGGTTGTGGCCTCTGCGGCGACACGCAGGTCCCAACGGACAAAAAGAGGCTTACTGGAGTTGGCGGGAGCCATCAAATGCAGCACAGGAAGATCTGCCTTGGCTTACATGATGTACGGATGCTACTGTGGACTGGGTGGTCAAGGCTGGCCAAGAGACAAGGCAGATTGGTGTTGCCACAGACATgactgctgttatggagatgcaGAACGTCTTGGCTGCCAAACCAAAACAGACCAGTATAGGTGGACGTGTGAGGACAAGAAAGCTGAGTGTGATGATTTGATGGGCAAATGTGAAAAGCTGCTGTGCAAGTGTGACAGAGACGCCGCCAAATGTTTGAGAAAGGCACCTTTTATCCGGAAATATGCCCTTTGGCCCGATTTCCTCTGTGGTCACGAACATCCAATGTGTAATATTTATTGACACAATACATGTATGTCCTGGTGTGCcttttgtaaatatattatgTTACATGGCATTACTATAAAATACTCAAAGACACTCAAATTATTTGGCttatatggtgtgtgtgtattttttgctgttttttattATCAGGCTCTTTTAATTAAATTGTGAAAGAACATAATGAGGTGTGTGAGGAGTAAAACAGTGTTGTGTCTTTGCAGATACCTTTATATTGAATATGTTATTTTAATATTGAATATGTTGTTTTAATAAACGACAAAAGTATTAAGA

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211325 lncRNA upstream 39704 17690624 ~ 17697287 (+) True G155917
TU211287 lncRNA upstream 233354 17502978 ~ 17503637 (+) False hs3st4
TU211286 lncRNA upstream 234374 17502391 ~ 17502617 (+) False hs3st4
TU211288 lncRNA upstream 303265 17433518 ~ 17433726 (+) True G155885
TU211285 lncRNA upstream 354831 17381918 ~ 17382160 (+) True G155882
TU211353 lncRNA downstream 45578 17786722 ~ 17791402 (+) False axin1
TU211424 lncRNA downstream 203517 17944661 ~ 17948226 (+) True G155987
TU211455 lncRNA downstream 278855 18019999 ~ 18022045 (+) True G156016
TU211501 lncRNA downstream 438624 18179768 ~ 18180082 (+) True G156053
TU211595 lncRNA downstream 585186 18326330 ~ 18326696 (+) True G156113
XM_039824014.1 mRNA upstream 17528 17716739 ~ 17719463 (+) True rmi2
XM_039824010.1 mRNA upstream 21296 17711170 ~ 17715695 (+) False ubfd1
XM_039824009.1 mRNA upstream 21296 17711310 ~ 17715695 (+) False ubfd1
XM_039824011.1 mRNA upstream 21296 17711910 ~ 17715695 (+) True ubfd1
XM_039824008.1 mRNA upstream 44265 17685326 ~ 17692726 (+) True kdm8
XM_039825132.1 mRNA downstream 9733 17750877 ~ 17791408 (+) False axin1
XM_039825131.1 mRNA downstream 10367 17751511 ~ 17791408 (+) True axin1
XM_039825130.1 mRNA downstream 10367 17751511 ~ 17791408 (+) False axin1
XM_039825128.1 mRNA downstream 22958 17764102 ~ 17791408 (+) False axin1
XM_039825133.1 mRNA downstream 22958 17764102 ~ 17791408 (+) False axin1
XR_005641811.1 other upstream 12762 17716739 ~ 17724229 (+) False rmi2
XR_005641831.1 other upstream 970246 16757645 ~ 16766745 (+) False raver1
TU210542 other upstream 1845973 15887190 ~ 15891018 (+) True LOC120574525
TU210337 other upstream 2208573 15527941 ~ 15528418 (+) False rasd2
TU210329 other upstream 2224181 15510225 ~ 15512810 (+) True arl16
XR_005641818.1 other downstream 539646 18280790 ~ 18304091 (+) False ttyh3a
unassigned_transcript_856 other downstream 584185 18325329 ~ 18325400 (+) True trnac-gca_23
unassigned_transcript_857 other downstream 585830 18326974 ~ 18327045 (+) True trnac-gca_24
unassigned_transcript_858 other downstream 587349 18328493 ~ 18328564 (+) True trnac-gca_25
TU211575 other downstream 611267 18352411 ~ 18358524 (+) True LOC120575352

Expression Profile