RNA id: TU211424


Basic Information

Item Value
RNA id TU211424
length 512
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G155987
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17944661 ~ 17948226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCATAGTCTCTgggaaaaaagaaataATCAGGTCCGGTCTGTACTTGTGTATAAGCGCACAGAAAGCCAATCCGTTCTTGAATGATGTCGTCATGTTGGTGATGGCTACATCTCGGTAGCCGTCACACTGCACTTTACACCACTGCTCCAAAGCCTTGATGGCAGCCATGCTCCCAGCGCGAAAGAGACACTGTGCGCGCAGTAGCCTACAGACAAAAGTGTGTGCAACAGGCTGAGGCTCCAGCGTGGAGGAGTCGGAGGAAAGAGAGATCAAAACAAATTGTGTCTGTTCGGGGTTGAGCCGTGAACTGCAGCGCTGCAGCTGCGTCCTGTTTCCTTCTTTTACCTGAACGACAGCCGGGGCTGGGTAGCAGGACAAGCTGCTGCTGTGCGTTTCTCCCTCCACTCATTACACTAATTGACACCGACTGCTGATTCATCATTAACAACAGTTGAATTAAACTCAGCCAGAAAGCTATTTCCATTGTTTCCTGTGAGGACGTGTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211353 lncRNA upstream 153259 17786722 ~ 17791402 (+) False axin1
TU211328 lncRNA upstream 176017 17696316 ~ 17768644 (+) True G155919
TU211349 lncRNA upstream 203613 17736979 ~ 17741048 (+) True pla2g10
TU211350 lncRNA upstream 203613 17736979 ~ 17741048 (+) False pla2g10
TU211325 lncRNA upstream 247374 17690624 ~ 17697287 (+) True G155917
TU211455 lncRNA downstream 71773 18019999 ~ 18022045 (+) True G156016
TU211501 lncRNA downstream 231542 18179768 ~ 18180082 (+) True G156053
TU211595 lncRNA downstream 378104 18326330 ~ 18326696 (+) True G156113
TU211596 lncRNA downstream 384302 18332528 ~ 18332877 (+) True G156114
TU211585 lncRNA downstream 404185 18352411 ~ 18379788 (+) False LOC120575352
XM_039823946.1 mRNA upstream 93127 17848269 ~ 17851534 (+) True uncx
XM_039825132.1 mRNA upstream 153253 17750877 ~ 17791408 (+) False axin1
XM_039825131.1 mRNA upstream 153253 17751511 ~ 17791408 (+) True axin1
XM_039825130.1 mRNA upstream 153253 17751511 ~ 17791408 (+) False axin1
XM_039825128.1 mRNA upstream 153253 17764102 ~ 17791408 (+) False axin1
XM_039824201.1 mRNA downstream 38341 17986567 ~ 17998047 (+) False mafk
XM_039824203.1 mRNA downstream 39199 17987425 ~ 17998047 (+) True mafk
XM_039824202.1 mRNA downstream 43736 17991962 ~ 17998047 (+) False mafk
XM_039825386.1 mRNA downstream 136596 18084822 ~ 18161849 (+) False elfn1a
XM_039825387.1 mRNA downstream 137870 18086096 ~ 18161849 (+) True elfn1a
TU211348 other upstream 203613 17736979 ~ 17741048 (+) False pla2g10
XR_005641811.1 other upstream 220432 17716739 ~ 17724229 (+) False rmi2
XR_005641831.1 other upstream 1177916 16757645 ~ 16766745 (+) False raver1
TU210542 other upstream 2053643 15887190 ~ 15891018 (+) True LOC120574525
TU210337 other upstream 2416243 15527941 ~ 15528418 (+) False rasd2
XR_005641818.1 other downstream 332564 18280790 ~ 18304091 (+) False ttyh3a
unassigned_transcript_856 other downstream 377103 18325329 ~ 18325400 (+) True trnac-gca_23
unassigned_transcript_857 other downstream 378748 18326974 ~ 18327045 (+) True trnac-gca_24
unassigned_transcript_858 other downstream 380267 18328493 ~ 18328564 (+) True trnac-gca_25
TU211575 other downstream 404185 18352411 ~ 18358524 (+) True LOC120575352

Expression Profile