RNA id: TU215606


Basic Information

Item Value
RNA id TU215606
length 2601
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G159063
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 29431242 ~ 29433842 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGGTCAGgctttaacaaaacaaacagactaTACAATTCtcagaaaatacagaaagaaagaagaaaaaaaaaaaaatacaaataaaaactgtcTAGCTAAGGGACACCATAAGTGCTCACTTCTCTGTTTTGTCAGTTTGAGCCATAATTTGTGGCTTTTGTGTCACTTTTATTTCTGTTTGGGATTGAAGTTCCGTGGATAAGGAATTCCATAAGTGTATACCTTTTACTGACCAGGAGAACTGACCAAAATGTGTTCTAAACATTGGGACTCTGGTTAGCTACTTCTCTTGTCCTGGTCCGGCCATTATTTCTCTATAATGAGTTTAGACGCCACAATATTCAACTTCATTTTAGACAAtctatgtagtagggggtccctgctgcGTCGCTCTCAGTTAAGCGTTCCTTGGGGCGAATAAAATGGCGTTCGTTGGGGGCGACAAAAAGACATCAGCACTGGACCAAGCTACTGACCGACGTGACCTTTGACCCGCTGTTTGCCTGTGGGGGGCTGcactgcttgcctggtcctgcCAGAGGAACTGGGGCTCACTCTTCAACCTCCCAACAACTACAACAACCACTGCGACGACAACATCCAGCCATCCTCAACATCTggaaacacacgcacaaacaaacacacaaacaaacaaacaaacaggtggCGGACTGATGACATCAGACCATGTGCTTATTTCCTGTCAAACAGCCAAACCTTTAAAACATCAAATCTCCAAATAGAATATATTCATGAATCCAATTTGATTGGATGAAACactgtttatacagtatatatacatatatatgtatatatatagagaatattatttttcttttttatacaaaaagagaaagcattttgtgtttttatacatatatgtatgtacagaTAATAGAAAAGTGACCACACTGAGTGTGCTGTGACGTAACCGTGGGCAACAGGACAGGAGACAGTATTTACACTAACGAGgaattctttttaaaaaaagaaaagaaaaaaaagggttagGGTCGTCGTCGTAGTGTTTCATAAACGTGCCACAATCCCACAATCCCCTTTTAGAGAAGAAGGGGCGGGGCTCAGGTCACATGACTCTCAATCAaaaatgagtgaaagagagagagagtgagtgagaggtGGTTTACGTATTCACGAATACTGCTAAAACAGGCCTGATCCTGAGACACTTAACACCAGATGCCATAAAAGTCTGATTGAATAGTAttattaaaaggtgcagtaggtaagacttattaaactaactttctgtcatatttgctgaaacggACCCtatctaactgcgtgtcaatcactgctcacgaacacgcattcattctcccttgtggggggaggggcttaggagacttttgggctttagcggaaaggaggggagggactgagaagttgttgatgttcaattattttttttttggctaagtcctggatcttcccagtcctacctacggcacctctAACATCACCTTAATATTCAACGGAGACTTTTACTGGGGATTTCTAGTGTGTAATGATGGCTttagaggctttttttttttttttcaaaaaaaaacaaacaaatgtccGTTGGGAGTACCTGGCATGAATATTGTCcgattgaaaagaaaaaaaaaatacaattcttAGCAGTTGTAATACATTTCTGAAACACATATTTATATCAAACTCTCATGATATTCTCTCTAGCCGTCTCGCTCCAGGTTGCTAAATAGTGAAGTAAGAACAAATTAAGGCATCCAGATGAAGAAACAAAGACTGAGAAATGAACTGACCGACAACAGCGGTGCGAGTGTGTGCGTCGACGGGTTTCTTCAGTCCtgattggctggttggtttTGCTGAGGTGCTGCGGCGTCGGTGTTTTGTGGTTTGTGACTGGACGGctcgttttgtgtgtgtgtttttttgtttagtttttttaaattttattttaaaggcacctagttcctcctcctcctctgttcattctaaaaaaaaaaaaaaaaaggtttactcCTCCTGCGCCAGCCAAGCCCACATTCGCTCGGCCTGTCTctctgacagacagacggacaagAAGACAAGTCGTCCACTTGTTGTCTGACATTTTGAAGTCCAAATTCtgttccctccctcccccaacAGTCATCGTCCCGCTGTGGAAACAGAGGAGTAGGGACAAAATAGAAAGACAGTAGGATGAATTGGAGTGGTGCTGTGTACAGGTGGTAAAATATGCAGGTCTTGCATGTCTCCTTGCTGACCCTGCTCCTCCTCTAGGTTTCCATGGAGACGCCAACAAGTCGTCTGCTCCTCGTCGGGCTGAAGAACCAGTAGAAAAGAGATGTGTCCGTGTTCACAGTCTCCGGCCTTTTCTAGTGCCTCCGTAATGTTCTCCTCAGCCAATCGGAGGCCTCCACGACGACACAAttccactctgtgtgtgtgtgtgtgcgtgtacctACACACActctgaggaggaagaggaaaaggaagagGGGAAGAGGAGGTGCCAGAAGGTGGTGAGAGTGTTGGAGTTGTTTTTTGTGGTGGTGGTTTAAGCCCTTCCTACAATACAGGCTCTTCTTCCATCGGCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215614 lncRNA upstream 12510 29414339 ~ 29418732 (+) True G159070
TU215607 lncRNA upstream 32332 29398710 ~ 29398910 (+) True G159064
TU215603 lncRNA upstream 39277 29391209 ~ 29391965 (+) True G159060
TU215599 lncRNA upstream 48625 29373867 ~ 29382617 (+) True LOC120575282
TU215515 lncRNA upstream 310254 29120778 ~ 29120988 (+) True G158987
TU215615 lncRNA downstream 15302 29449144 ~ 29454487 (+) True G159071
TU215620 lncRNA downstream 63315 29497157 ~ 29497462 (+) True G159075
TU215622 lncRNA downstream 80675 29514517 ~ 29514970 (+) True G159077
TU215624 lncRNA downstream 91297 29525139 ~ 29525391 (+) True G159079
TU215628 lncRNA downstream 114283 29548125 ~ 29549217 (+) True G159082
XM_039825027.1 mRNA upstream 5906 29418968 ~ 29425336 (+) True pex12
XM_039825028.1 mRNA upstream 5906 29418968 ~ 29425336 (+) False pex12
XM_039825029.1 mRNA upstream 5906 29418968 ~ 29425336 (+) False pex12
XM_039825030.1 mRNA upstream 5906 29418968 ~ 29425336 (+) False pex12
XM_039826003.1 mRNA upstream 49498 29365843 ~ 29381744 (+) False LOC120575282
XM_039824228.1 mRNA downstream 97558 29531400 ~ 29544306 (+) False LOC120574120
XM_039824229.1 mRNA downstream 98012 29531854 ~ 29544306 (+) True LOC120574120
XM_039824230.1 mRNA downstream 98245 29532087 ~ 29544306 (+) False LOC120574120
XM_039826004.1 mRNA downstream 249446 29683288 ~ 29757671 (+) True LOC120575283
XM_039824427.1 mRNA downstream 355955 29789797 ~ 29956543 (+) True LOC120574202
TU215520 other upstream 223556 29200608 ~ 29207686 (+) False LOC120574189
TU215521 other upstream 223556 29200608 ~ 29207686 (+) False LOC120574189
TU215523 other upstream 223556 29200608 ~ 29207686 (+) False LOC120574189
TU215524 other upstream 223556 29200608 ~ 29207686 (+) False LOC120574189
TU215266 other upstream 663654 28754334 ~ 28767588 (+) False rras
TU215617 other downstream 35083 29468925 ~ 29471599 (+) True G159073
TU216097 other downstream 1718717 31152559 ~ 31158441 (+) True G159484
unassigned_transcript_867 other downstream 2091148 31524990 ~ 31525062 (+) True trnak-cuu_7
unassigned_transcript_869 other downstream 2143181 31577023 ~ 31577095 (+) True trnav-uac_16
unassigned_transcript_870 other downstream 2144536 31578378 ~ 31578450 (+) True trnav-uac_17

Expression Profile