RNA id: TU215620


Basic Information

Item Value
RNA id TU215620
length 306
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G159075
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 29497157 ~ 29497462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATTCATGAAGGTTGAACCCGGACTTCCCTCCGCGATCCTTCcaccgtgtgtatgtgtgcgtgtgttaaaGTGGGTCCTCGGAGTCGGCCATGTGTCGAAGGAAATGCAACggacaggcaggcagatgtgTCAGGCTTTCTTATCGATGTCGGGTTTCCtgtaaaagagaagaaagattttttttttttagcacttgCTATTCACCCGTTTCTTTTTTCTGCCTTTCTCACACGTACTGTATGCAAATGGTCTGTTCACTAAACCCCTCCCCCAAACAGCAATTGTCCAATCATGATTTAGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215615 lncRNA upstream 42670 29449144 ~ 29454487 (+) True G159071
TU215606 lncRNA upstream 63315 29431242 ~ 29433842 (+) True G159063
TU215614 lncRNA upstream 78425 29414339 ~ 29418732 (+) True G159070
TU215607 lncRNA upstream 98247 29398710 ~ 29398910 (+) True G159064
TU215603 lncRNA upstream 105192 29391209 ~ 29391965 (+) True G159060
TU215622 lncRNA downstream 17055 29514517 ~ 29514970 (+) True G159077
TU215624 lncRNA downstream 27677 29525139 ~ 29525391 (+) True G159079
TU215628 lncRNA downstream 50663 29548125 ~ 29549217 (+) True G159082
TU215629 lncRNA downstream 61665 29559127 ~ 29560165 (+) True G159083
TU215630 lncRNA downstream 70060 29567522 ~ 29567891 (+) True G159084
XM_039825027.1 mRNA upstream 71821 29418968 ~ 29425336 (+) True pex12
XM_039825028.1 mRNA upstream 71821 29418968 ~ 29425336 (+) False pex12
XM_039825029.1 mRNA upstream 71821 29418968 ~ 29425336 (+) False pex12
XM_039825030.1 mRNA upstream 71821 29418968 ~ 29425336 (+) False pex12
XM_039826003.1 mRNA upstream 115413 29365843 ~ 29381744 (+) False LOC120575282
XM_039824228.1 mRNA downstream 33938 29531400 ~ 29544306 (+) False LOC120574120
XM_039824229.1 mRNA downstream 34392 29531854 ~ 29544306 (+) True LOC120574120
XM_039824230.1 mRNA downstream 34625 29532087 ~ 29544306 (+) False LOC120574120
XM_039826004.1 mRNA downstream 185826 29683288 ~ 29757671 (+) True LOC120575283
XM_039824427.1 mRNA downstream 292335 29789797 ~ 29956543 (+) True LOC120574202
TU215617 other upstream 25558 29468925 ~ 29471599 (+) True G159073
TU215520 other upstream 289471 29200608 ~ 29207686 (+) False LOC120574189
TU215521 other upstream 289471 29200608 ~ 29207686 (+) False LOC120574189
TU215523 other upstream 289471 29200608 ~ 29207686 (+) False LOC120574189
TU215524 other upstream 289471 29200608 ~ 29207686 (+) False LOC120574189
TU216097 other downstream 1655097 31152559 ~ 31158441 (+) True G159484
unassigned_transcript_867 other downstream 2027528 31524990 ~ 31525062 (+) True trnak-cuu_7
unassigned_transcript_869 other downstream 2079561 31577023 ~ 31577095 (+) True trnav-uac_16
unassigned_transcript_870 other downstream 2080916 31578378 ~ 31578450 (+) True trnav-uac_17
unassigned_transcript_871 other downstream 2082271 31579733 ~ 31579805 (+) True trnav-uac_18

Expression Profile