RNA id: TU216537


Basic Information

Item Value
RNA id TU216537
length 528
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC120574088
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 32464362 ~ 32465533 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCTAACAAAAGGTGAAAAACTTTCGATAATGGCGGCCGAATACGCGACAGGGAGATCCAAATGGACACGGACAATGCTGCCAACTTGAGGGAAGTCCTCCTCTGCTGGAAGGAGAACGACCTGGGGGAGGAGAGTGAGGATTTCCCTGCTGGTTTTGTGGACAGCACTGTGCACTGTCAGGGTGCAAAGGCTCTGGCTAAACCACGATCAGATGTCCCACGCCGTGCCGAGGATGTACCGTTAAAGGATCCCCCTGGAGAGTCTGAAGTCCACCCTCGTATCACTTTCCCCATCAAAATACAGGGCCAGCAATGAATAGAACAATAGGATCTATTTAAATGTCTATTGTGTTGCCTCTGCTTTCACTCTTGTATTTTCACTGTAATTAATAGCTATTGCAATAAACACcctttatataaacatatatgacTATTTTCTATGTTAACGTTATATGTCAGTTGGACACCATTTTAATTGCTCCAATTTTGCTAAATAACTCAAAATGGCCATTTGtggttatttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216529 lncRNA upstream 33501 32430747 ~ 32431054 (+) True G159832
TU216490 lncRNA upstream 149629 32314680 ~ 32314926 (+) True G159799
TU216489 lncRNA upstream 150423 32313900 ~ 32314132 (+) True G159798
TU216440 lncRNA upstream 249887 32210182 ~ 32214668 (+) True G159763
TU216399 lncRNA upstream 433527 32030089 ~ 32031028 (+) True G159723
TU216548 lncRNA downstream 109951 32575484 ~ 32576230 (+) True G159845
TU216599 lncRNA downstream 301718 32767251 ~ 32767451 (+) True G159887
TU216611 lncRNA downstream 479217 32944750 ~ 32944955 (+) True G159899
TU216618 lncRNA downstream 533497 32999030 ~ 32999544 (+) True G159906
XR_005641851.1 lncRNA downstream 704959 33170492 ~ 33171345 (+) True LOC120574301
XM_039824591.1 mRNA upstream 38184 32410079 ~ 32426371 (+) True LOC120574291
XM_039824592.1 mRNA upstream 39210 32410079 ~ 32425345 (+) False LOC120574291
XM_039824594.1 mRNA upstream 42078 32410079 ~ 32422477 (+) False LOC120574291
XM_039825402.1 mRNA upstream 155062 32279181 ~ 32309493 (+) False LOC120574894
XM_039825142.1 mRNA downstream 141306 32606839 ~ 32626681 (+) True LOC120574734
XM_039824597.1 mRNA downstream 573184 33038717 ~ 33052016 (+) True LOC120574295
XM_039824598.1 mRNA downstream 573184 33038717 ~ 33045623 (+) False LOC120574295
XM_039826019.1 mRNA downstream 1043574 33509107 ~ 33511123 (+) True LOC120575298
XM_039824595.1 mRNA downstream 1063129 33528662 ~ 33543161 (+) True LOC120574293
TU216530 other upstream 19091 32431749 ~ 32445464 (+) True G159833
unassigned_transcript_872 other upstream 884062 31580421 ~ 31580493 (+) True trnav-uac_19
unassigned_transcript_871 other upstream 884750 31579733 ~ 31579805 (+) True trnav-uac_18
unassigned_transcript_870 other upstream 886105 31578378 ~ 31578450 (+) True trnav-uac_17
unassigned_transcript_869 other upstream 887460 31577023 ~ 31577095 (+) True trnav-uac_16
TU216651 other downstream 696862 33162395 ~ 33162811 (+) True G159938
TU216677 other downstream 842033 33307566 ~ 33311605 (+) True LOC120574300
TU216679 other downstream 842033 33307566 ~ 33311605 (+) False LOC120574300
TU216817 other downstream 997722 33463255 ~ 33532264 (+) False LOC120574293
unassigned_transcript_873 other downstream 1129775 33595308 ~ 33595379 (+) True trnap-cgg_4

Expression Profile