RNA id: XM_039824591.1


Basic Information

Item Value
RNA id XM_039824591.1
length 2401
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC120574291
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 32410079 ~ 32426371 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGAGGGAACTGCAGACCGCTGGACTACTCGACTCACTATTGACCGTCACTCAACTCTTTTTTACGCCAGAGGATTTATAGGCTACATGTAATTTTTGCGTCCTGTGTGTTAATATTTGAATTAGCTTTTGGGGATGACAAGTAAAATGAGGTTTGTTCGGTCTCTGGTGAAGGCGGCTGCGCTGGCCAACGTGCCCAAACACGTCGATCATTTCTCCAAgttctccccctctcctctttcaATGAAGCAGTTCCTGGATTTCGGTTCAACCAATGCCTGTGAACGCACATCGTTTGTTTTCCTTCGCCAGGAGCTTCCTGTCCGTTTGTCCAACATCATGAAGGAGATCAATGTGCTGCCGGACCGGCTGCTGGCTACGCCCTCCGTCCAGTTGCTCCAGAGCTGGTACATCCAGAGCCTGATGGAGATCCTGGAGTTTCTGGATAAGAACCCTGATGACAACAGAGTCCTTGAGATGTTTGTGGAGGTGTTGGAGGCCATTAGGAACCGGCACAACGATGTGGTCCCCACCATGGCTCAGGGAATCATTGAGTACAAAGACACTTTTGGCCAGCAGGACGCTGTTACTGACCACAACATCCAGTACTTCCTGGATCGCTTCTACACCAGCCGCATCTCCATCCGCATGCTCATCAACCAGCACACTCTTGTCTTCAACGGTAACACAAACCCCGCCCACCCCAACACCATTGGCTGTATCGACTCCATGTGTGATGTGACAGAGGTTGTGCGAGaTGCCTATGAGAGTGCTCAGTTGCTGAGTGAGCAGTATTACCTCGGAGCACCAGAGCTGGAGCTGAGGCAGATGAATGCCAGCAACAACAAAGAGCCCATCCACATTTCATACATCCCATCTCATCTGTACCACATACTTTTTGAACTCTTCAAGAACGCCATGAGAGCAACCATTGAGAACCATGAGGCCAGCAGGACCCTCCCACCAATCAAGGTCATGGTCGCTCTTGGTGGAGAGGACCTGTCAATCAAGATGAGTGACAGAGGAGGTGGCGTTCCCTTCAGGAAGACCGAGCGTCTGTTCAGCTACATGTACTCCACAGCTCCCAGACCCTCCATaggagacaaacacagagcCCCACTGgCAGGGTTTGGCTATGGTCTGCCCATCTCTCGTCTCTACGTTCGCTACTTTCAGGGAGAGTTACAGCTCCACTCTATTGAGGGTTATGGCACTGACGCAGTCATACACCTGAagGCATTGTCTACTGACTCAGTGGAAAGGCTCCCAATTTTTAACAAGACTGCTCTGCGTCACTACAAGCTGAGTTTGGAGGCAGACGATTGGTGTGTTCCCTCCAAGGACCCGCTGGACCTTGCCGTGTACCGCACTGCCAAGTAATTCATTCATGACCTGGCATGACTTTGGACACAACCCTTACAAGTTGACCATAAATGTCCTTCAGAGGCAGGGCACTGTAGGACCTGAACTATTAGCCTGGGAGATGAAGTGACCAAAGGTGGCCAAGGAGACCTGCAATTGCAGAGCGTCAGCGTCCTGATTGTCTGGGAACTTTCTTGATTGGAGCGAGCGTCTTCTTCCTGTATCTACCTCTGCCTTCTTTACATTTGTGCAATAGACAGAGATGATGGTGGATAATCAAAGATGCAGTCATAGAAATCcaaaaatgagagagagatggaattGATAGTAGGGCGGGAAAAGTTGAGGAACATCTCTAATTGTGgacattatctgtatctgtaataTTGGGATTGTGATGTACAAACACATTTCACCCAAATGTCAGGTCTTTAGGTTTGGATATGTCTCCAGAATGTTTTCCTCAGAGACAAAAGTACCTGTGCGTGTTGACTGAGaagtgtgtgtttatctttttGCCACAAGAAATCAaacatttcctctttctttgtgtgccTACTGTTAGTGGAAATACTATGAAAACGTGTGTTGTTTGTACAAATTGACAATAGGTAAAACCTCTCTTGAAATTCCTGTTTTGTGAACAGGTGTTCAGCTGCTTAGTTACTGATAGTAGGATTCAAGATAATTTGGTTAGAGTTAAACATGAACTGTAACATTGTCAAAGGGTTATGTAGACTTCAGTCTTCTGTTGACATTAATATTTATCTATCACTCAGCTTTGGTAAAAGTGTGGAATGTGCAATCAGATTGTTGTTGAAGACCAGTAAGGGGTCCAAACTGCAATGAGTATTTGACTGTGTATGGAAATAATAACTGTTATACTGTATAGTGTGATTCACTGTGTGGATTCACAGATATATGTAACCCAGACATTGTGTTATTGTGTCATTTGAAGTGTTATCTATTTTATATTTGAAGTGAATTGTTCTTATTGTAGgacttatattttttataaagataAATTTCCTGAAATTAA

Function

GO: NA

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216490 lncRNA upstream 95153 32314680 ~ 32314926 (+) True G159799
TU216489 lncRNA upstream 95947 32313900 ~ 32314132 (+) True G159798
TU216440 lncRNA upstream 195411 32210182 ~ 32214668 (+) True G159763
TU216399 lncRNA upstream 379051 32030089 ~ 32031028 (+) True G159723
TU216343 lncRNA upstream 515930 31893862 ~ 31894149 (+) True G159670
TU216529 lncRNA downstream 4376 32430747 ~ 32431054 (+) True G159832
XR_005641820.1 lncRNA downstream 37991 32464362 ~ 32465432 (+) True LOC120574088
TU216548 lncRNA downstream 149113 32575484 ~ 32576230 (+) True G159845
TU216599 lncRNA downstream 340880 32767251 ~ 32767451 (+) True G159887
TU216611 lncRNA downstream 518379 32944750 ~ 32944955 (+) True G159899
XM_039825398.1 mRNA upstream 100586 32279167 ~ 32309493 (+) False LOC120574894
XM_039825403.1 mRNA upstream 100586 32279167 ~ 32309493 (+) False LOC120574894
XM_039825404.1 mRNA upstream 100586 32279167 ~ 32309493 (+) False LOC120574894
XM_039825402.1 mRNA upstream 100586 32279181 ~ 32309493 (+) False LOC120574894
XM_039825400.1 mRNA upstream 100586 32291513 ~ 32309493 (+) True LOC120574894
XM_039825142.1 mRNA downstream 180468 32606839 ~ 32626681 (+) True LOC120574734
XM_039824597.1 mRNA downstream 612346 33038717 ~ 33052016 (+) True LOC120574295
XM_039824598.1 mRNA downstream 612346 33038717 ~ 33045623 (+) False LOC120574295
XM_039826019.1 mRNA downstream 1082736 33509107 ~ 33511123 (+) True LOC120575298
XM_039824595.1 mRNA downstream 1102291 33528662 ~ 33543161 (+) True LOC120574293
unassigned_transcript_872 other upstream 829586 31580421 ~ 31580493 (+) True trnav-uac_19
unassigned_transcript_871 other upstream 830274 31579733 ~ 31579805 (+) True trnav-uac_18
unassigned_transcript_870 other upstream 831629 31578378 ~ 31578450 (+) True trnav-uac_17
unassigned_transcript_869 other upstream 832984 31577023 ~ 31577095 (+) True trnav-uac_16
unassigned_transcript_867 other upstream 885017 31524990 ~ 31525062 (+) True trnak-cuu_7
TU216530 other downstream 5378 32431749 ~ 32445464 (+) True G159833
TU216535 other downstream 38184 32464555 ~ 32465418 (+) False LOC120574088
TU216537 other downstream 38184 32464555 ~ 32465533 (+) False LOC120574088
TU216651 other downstream 736024 33162395 ~ 33162811 (+) True G159938
TU216677 other downstream 881195 33307566 ~ 33311605 (+) True LOC120574300

Expression Profile