RNA id: XM_039824070.1


Basic Information

Item Value
RNA id XM_039824070.1
length 1896
RNA type mRNA
GC content 0.41
exon number 2
gene id rln3a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10988167 ~ 10994030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgcaCCTCTTCTTTTAGGACTTAGATGTTGCTCTGTGTTGAGTATCCCTATGCTATTCACTGGTGTCAGCTACCAACTTGAAGATTCATTATTATGATAAATTGTCATGCTTATTTTCTTgctttgatttgtttatttgtttgtcaaTAGGGGACAAGACCATGATATCTAGTGATTTAGCAATGTATAGTGCCAATACATCAAAGAACATTGAAATATTCTAATGCCATGCCCTACGATAAACCTATAGATGGAGAAAGAGTTGTAATTAACCAGTATGctataaaagtttttttatgtCACATATTCTCATACTTTTTGCCATTTGTTGACATTGTCAATATGCTCCGCATATTCAAATCCACTACATGACCCATGATTATGGAATAATTTACATATTAAATGTAAGATCTGATGAAGTCATAATATTGAGGGACATTAACGGTGACAAAAGTGCTTCTCATGCTGAAACACAATTCGATCACTGGGGCCTCTGACATATTCGTTAATTATGCCACCTTTGGTCCGCTTTTTGTCTCCATAAAGGTCTCTGAGGACTGTATCTCTCTTTCGAATCTGTTCTTCCGGAGAAGGCCTGCATACGCAGTATGCAGGTTTCCCTTGCAGGACTCCAAACCCCTTTATAAACCACGCCTGGGTCAGCTAGAAAGTCATAACTCTGACAAACAGGGAGACAGAAAGCTAAGTGCTGCTCAAACCAAAGAATATTCTGTCATTTTAACcacttttgttttgcttttatttcCTTGGGGTACTATGTGGAAAGCTGTGGTACTGGTGGTGTGTCTGCTAGTGGCTGGGGTTCAGCCCATGGACAGCCCAACATATGGGGTAAAGCTATGTGGCCGGGAGTTCATTCGGGCAGTCATCTTCACCTGCGGAGGCTCACGATGGAGGCGGTCACTCAGGAGTTCAGATGTTTCAGAGGACCCATTCAGCTCCCGCCAGGAGGAGTCTTTGGAGGGCTTGAGTCACAATCCTGTGGTAGAGAGTCTCCTCCAAAGCAACAGTGATCTAAGCTTCACAAGTAGGAACGACCATGAGGGAGTGTTTAGCAGGCCGGCACGTTCTTTCATCAGTGACGAAATCCTGGAAGTCCTACGCAAGGCTGACCGCAAGGGCCGGGACGTGGTGGTGGGCCTGTCTAACGCCTGCTGCAAGTGGGGCTGCAGCAAGGGCGAGATCAGCTCCCTATGTTGAGAGTCAACCTTCGCCACACACTTCTTTTTTCACACTTCTCATGAATTTTAGGTCATTTTACATTATATCCAGTGTCTTACAGTTAAACCATCATGTGAACTGTTTAATTgtgaaattatttattattattattattatttatttttgaagtttttagTATCTATAAAGTGTATGGAAAGGGCTGCCATGTGTTCAAAAggtttatatatatttctgtttaaaattattaaacatggggcgcctggttagctcacctgtttgagtgtgcgccccatgtacggaggctcagtccttgtcacagcggccgtgggttcagttctgacctgtggccctttgctgcatgtcattcccaaaCTCTCTCACACTTTCCTGTCTTAATCTGTCATATCAATTAAGgcaataaaagcaacaaaaaaaactttgaagaaaagATTAAACATGAATATTATGTTTGTAATAAACAGCCTTAATTATTCAATCTTGAACCAAGCTGTTTTGTCCTTCCCAACCACTATCACGCACAAAATAATTACCTGAATTGTGCATCTGAGAATTCAAGGAAATAATATGCTTTGTTAAGCTCATTTGATAACAACTGTAAGTCACAAATGTCTCATCTTGTTTGTTAGAAGTAGATTGTTGGTATTTTGCATTTGTTTCATTGTACACAGAAC

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208598 lncRNA downstream 28646 10950571 ~ 10959521 (-) True G153950
TU208577 lncRNA downstream 80559 10905355 ~ 10907608 (-) True G153937
TU208277 lncRNA downstream 393160 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 694001 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 818728 10163444 ~ 10169439 (-) True G153663
TU208584 lncRNA upstream 42504 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 78341 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 281117 11271819 ~ 11272848 (-) True G154036
TU208792 lncRNA upstream 361501 11352203 ~ 11352565 (-) True G154088
TU208823 lncRNA upstream 476206 11466908 ~ 11467112 (-) True G154115
XM_039824060.1 mRNA downstream 1007 10975641 ~ 10987160 (-) False il12rb2l
XM_039824059.1 mRNA downstream 1007 10975641 ~ 10987160 (-) True il12rb2l
XM_039825578.1 mRNA downstream 18411 10954170 ~ 10969756 (-) True LOC120575016
XM_039825580.1 mRNA downstream 21307 10954170 ~ 10966860 (-) False LOC120575016
XM_039825783.1 mRNA downstream 40497 10942812 ~ 10947670 (-) True fbxw9
XM_039824073.1 mRNA upstream 17940 11008642 ~ 11016591 (-) True LOC120574053
XM_039824074.1 mRNA upstream 17940 11008642 ~ 11015694 (-) False LOC120574053
XM_039824076.1 mRNA upstream 19497 11010199 ~ 11016591 (-) False LOC120574053
XM_039824075.1 mRNA upstream 19497 11010199 ~ 11016591 (-) False LOC120574053
XM_039824812.1 mRNA upstream 67190 11057892 ~ 11063850 (-) False c15h17orf75
XR_005642003.1 other downstream 19993 10968106 ~ 10968174 (-) True LOC120575512
TU208443 other downstream 196628 10784112 ~ 10791539 (-) True LOC120574455
TU208212 other downstream 597991 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 598047 10360801 ~ 10390120 (-) False gtpbp1
XR_005641868.1 other upstream 87885 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 87885 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 87974 11078676 ~ 11080606 (-) False LOC120574486
TU208632 other upstream 120266 11110968 ~ 11137482 (-) False tnrc6c1
TU208722 other upstream 212748 11203450 ~ 11225546 (-) True G154033

Expression Profile