RNA id: XM_039824073.1


Basic Information

Item Value
RNA id XM_039824073.1
length 2509
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC120574053
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11008642 ~ 11016591 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCTCCGGGTGTACCCGTTAGTTTCTTGACTTTAACACTCCTGCGCAGATCCCGGTTTTTGGCTGCCTTTTCCTCGCCTGTTTTCTGGTCAACATGTCGGAGTATAATGTGGTGCCGCCACCCGGGTCCGGGGCCCCTCTCGGCGGACAGGCGGGTCTTGGGAACGGAGCTGGAGACATCAAGAAAGATGCGTTTGCGGACGCGGTGCAGCGGGCACGGCAGattgcaGCTAAGATCGGGGGTGATACTGGTCCTCCCATGAACAACAACACTGCATCAGATGGCTTTCCATTCACTGCACAGAAACGACAGCTGGAGGATGCAGATGAACCGGAGAGCAAGAAGCTGGCTGCACAGAGTGACTTAGATTCAGCCAATGCATTGTCTATTGGTGCACAGCTAGCTGCTCTTGCACAACAAAGGCCCGCCTACAGCACAGAGGAGTACAGTGTACCAGACAGCATGGTGGGACTCATTATTGGCCGTGGAGGTGAACAGATCAATAAGATTCAACAGGAGTCAGGTTGCAAGGTTCAGATAGCTCCAGacAGCGGAGGCCTTCCAGACAGGAGAGTCTCTCTTACAGGTTCCCCAGACTCCATACAGAATGCCAAGGGGCTGTTGGATGAGATAGTCTCACGAGGGAGGGGTACACCCCCTTCTTCTTATCACGAGTCCACTAACGGGCAGAATGGCACGGTGCATGAGATGATGATTCCAGCTGGCAAGGCTGGTCTTGTCATTGGCAAAGGAGGCGAGACTATCAAACAGCTACAGGAGCGTGCAGGGGTGAAGATGATCCTGATCCAGGATGCCTCTCAGGGACCCAACGTTGACAAGCCCCTGCGCATTATCGGAGAACCCTACAAAGTCCAGCAAGCCCAGGAGATGGTGCAGGAGATTCTGAGGGAGAGAGACCACGGTGGCTTTAGTGAAAGAAATGATTTTGGCCCCCGAATGGGAGGAGGCATGGATATCCCTGTACCAAGACACTCAGTCGGTGTGGTCATCGGGCGCAATGGAGAGATGATTAAGAAAATACAGAATGATGCTGGAGTTCGGATACAGTTCAAACAAGATGATGGGACTGGTCCAGATAAGATTGCTCACGTCAGTGGTCCCCCTGACCGCTGCGAGCATGCTGCCCAGATCATCAACGACCTGCTGCAGAGCATCAGGGTCAGGGAGGAGGGACAGGGGGGTCCCCCAGGTCCTCCAGGCATGCCTGCAGGCAACAGGGGCCGAGGTGGGGGACAAGGCGGTTGGGGGTCCCCTGGAGGGGAAATGACCTTCTCTATTCCTGCCCACAAGTGTGGGCTAGTGATTGGCCGGGGAGGAGAGAACGTCAAGTCCATCAACCAGCAGACCGGGGCGTTTGTAGAAATCTCTCGACAGCCGCCCCCCAACGGAGACCCCAACTTCAAGCTTTTTATCATTCGGGGCTCACCGCAGCAGATCGACCACGCCAAGCAGCTCATTGAGGAGAAGATTGAGGGTCCTCTGTGTCCTGTGGGTCAGGGGCCAGGTGGACCAGGTCCTGCTGGTCCAATGGGTCCCTTCAACCCCAACCCATACAACCCCGGGCCGCCTGGGGCACCCGGACCACCACATGGCGGTCCTCCAGGTCCTCACCAGTACACCCCTCAGGGCTGGAGCAACACCTTCCAGCAGTGGCAGCCTCAGGCACCCCATGACCCCAGCAAGGCAGCAGCCAATGACCCCAACGCAGCCTGGGCGGCCTACTACGCTCAGTACTACCAGCAGCCATCGGGGGCTGTGCCAGCCCAGTACCCTGCTAACCCAGCTGGAGGTGCCCAAACTTCAGGGGACCAGACCCAGCCTGCACAGACGCCGGGGGGCCAGCCAGACTACACCAAGGCCTGGGAGGACTACTACAAGAAGATGGCCCAGGCAGGTGGCTCGGTCCCTGCGACAGCAGCTGCAGCCCCAGGAGCAGCTGGAGGAGCAGCATCCACAACGGGGGGCCAGCCGGACTACAGCGCAGCCTGGGCAGAGTACTACAGGCAGCAGGCTGCGTACTATGGACCGACAGGACAGGCCCCCGGCCAGCCAGCCACTCCCCAGCAAGGACAGACGCAGTGAAAGTTCATGGCAGGAGGTCTTGGGAGAGAATCGGGAAGACGGGATAAAGAATGACGACCCTGAACTTAAGGCCAGAATCTAGCCTGTTTTGTATTTCTTGTGAGGGGAAATGAAAATCTTTCTCATCACCAAACACCACCTGgacactttttaataaaaatgtgaactgAACAAATGTTCTAGTGCTTTGCCGCTGAGGGGAGCGAGAAGACTGATAATCTCGCCATGACGGGGAAAATGGCTTCTCAATGCCTCtacatacatttacagtatatatgccATTATTAACATGGAAGCCTTGAAACGCTTCAAGGCTAAATCTATCTCATCTTCCTTTTATTAACTTAAGACTTCCTATTTTTAAAGCACTTCATTcgcgcatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208598 lncRNA downstream 49121 10950571 ~ 10959521 (-) True G153950
TU208577 lncRNA downstream 101034 10905355 ~ 10907608 (-) True G153937
TU208277 lncRNA downstream 413635 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 714476 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 839203 10163444 ~ 10169439 (-) True G153663
TU208584 lncRNA upstream 16615 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 52452 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 255228 11271819 ~ 11272848 (-) True G154036
TU208792 lncRNA upstream 335612 11352203 ~ 11352565 (-) True G154088
TU208823 lncRNA upstream 450317 11466908 ~ 11467112 (-) True G154115
XM_039824071.1 mRNA downstream 14612 10988167 ~ 10994030 (-) False rln3a
XM_039824070.1 mRNA downstream 17940 10988167 ~ 10990702 (-) True rln3a
XM_039824060.1 mRNA downstream 21482 10975641 ~ 10987160 (-) False il12rb2l
XM_039824059.1 mRNA downstream 21482 10975641 ~ 10987160 (-) True il12rb2l
XM_039825578.1 mRNA downstream 38886 10954170 ~ 10969756 (-) True LOC120575016
XM_039824812.1 mRNA upstream 41301 11057892 ~ 11063850 (-) False c15h17orf75
XM_039824811.1 mRNA upstream 41301 11057892 ~ 11063850 (-) True c15h17orf75
XM_039824820.1 mRNA upstream 61954 11078545 ~ 11080607 (-) False LOC120574486
XM_039824819.1 mRNA upstream 61954 11078545 ~ 11080606 (-) False LOC120574486
XM_039824818.1 mRNA upstream 61954 11078545 ~ 11080605 (-) True LOC120574486
XR_005642003.1 other downstream 40468 10968106 ~ 10968174 (-) True LOC120575512
TU208443 other downstream 217103 10784112 ~ 10791539 (-) True LOC120574455
TU208212 other downstream 618466 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 618522 10360801 ~ 10390120 (-) False gtpbp1
XR_005641868.1 other upstream 61996 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 61996 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 62085 11078676 ~ 11080606 (-) False LOC120574486
TU208632 other upstream 94377 11110968 ~ 11137482 (-) False tnrc6c1
TU208722 other upstream 186859 11203450 ~ 11225546 (-) True G154033

Expression Profile