RNA id: XM_039824378.1


Basic Information

Item Value
RNA id XM_039824378.1
length 2061
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120574173
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4338081 ~ 4346405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctacttgggcggagtgatttgctcgcagcacctgagaagccctgtggtgaggagcagagagtaacaacggtgaTTTTCAGGtactaatcactccgcccaagtagctgATGTAGCATTAGCAGCAGTCTCagtaagtcggcgtgttccatTAAAAGTACcaagttcggtacccaaccttgctaagtatacagtacattttgtatACTTACCAATACCTGGTGGGGAAAGTAACTGACTACAAAACCGAACATTGGGTGacttttcagtaaaaaaaaaaacatctgtcatAGTAGCCACTTTTAATGAAATCATCAGTCACCCTTTATGATGTCTGGGATCATGATGCCATCCTAATCATTTTTTACCAGTATCAAGAGTTTCATTACAACTGCCAAAAGTTGGTGCACATGCAAGTTTCAGAAGGAGGCTGAAGGACACCGCTGTGCCGACTATTTTCAACTTTCCGCCACATTTGAGGAAAAAGGAGCCCCCTCCCAGGCCCACGCTGAACCGCTCTACTGGGGGGGTAAACGACCCTTTGGTTTCTCCTGCTGATCATTACATTGTCGTTGTGAAGCAAGAGACTGTCGAGGAGGCCGATGTCGTTGTGAAGCAAGAGACTGCTGAGGAGACCAATTTCGTTGAATATGGCGACATTGTTAGGGTCACAGTCGGTGAGGTCATCACTGATGACATGAGTGAGTACACCACAAGCGGAGATTTAAAAACCGTTATGCATGATCATATATACTTTGGCCAAGAAGAGGAGGACATCTCTTTGAGCTCTGAGCACATCTACGTTTCTGATCCTCCCACGACACTCGGACATAAAGCAAATGTAGCACACGACCAACCCGCTGTAGCCGTTTCTGAGGCTCCCACGACACTCGCAAGTCAAGCAAATGTATTACGTGGTCAGCTAGTTTTAGCTGTCTCTGAGCCCCATACAACACTCCCAAGTCAAGAAAATGTATTCCATGGTCAGCTTGTTTTAGCGGTTTCTGAGTCCCCCACATCGCTCACAAGTCAAGCAAACGCGGCACACGATCAGCCTGTTGTAGCGGTTTCCGAGTCTCCCACAACACTCGCACATAAAGCAAGTGCAGAACACGATCACCTTTCATTAGCCCTCTCCGATTCTCCCGCGAAACTCAAACATCAAGTAAGGGTCCTACACGAGAAGCTTGTCTTAGCCCGCAAAAAGTTTAAGCTGAAGTGTCAGCAGACGAGGAGGATGCAATCAAAACTCGTGTCCTTGAAAGAGGAGACAAAGGCTCTAAAGACAAAGTTGGACGACGCTGAAAAGCAGATGGCCGCGCTATCGCAGAAGTCCATCAACAACGGAGGTAAACGCAGGAAAGCAAAAGCAATCCCAAAAGAAGCAAAGCATCCACTTAAGCAGCAACTGCTTCCTACTGCCCTGATCGAAATCGCTTTCCCTGCGCCGCCTTCCCCCGTGCCAACTTCCACACAACAGGACTTAAAGTGATCTTGATGAACAAAATGAACAACAACATGATGGGGATCGTTGGACTGTCAGCAGGAAGCGCACAGAGATCAGGCTGGGGTAAAGGACCAGTCAGACAAACGGTAGCAGAGTCAGTTTGCGACTATGAGGGAGACACGGTTATTGCCGCTGATTTCAAAGAGATCAGGTATTAAGAGGGAAAGTCCATGAAGTAAAGCtaacaaaagtgtcaaaagaaAACCGTGTCCTTCCTCTGTCTCATTAAAGGGACTGAGTTTAGTTTTGAAGTGGAATTTATTTCCCAGATTTGAAACCGTTGTAATGTCTGTCACAATTTTTCTGAAGAACACAGAAAGCATTGGGCAGCCGACTTTCATTCATCAGCAGATTTTTCGTTTAATGTAGAAGTTTAGACCACAAGTTGCAGACGATGGATCGTTTTTTATTGcgttttgttaatttgtttattgTTCAGAAGCAGCTTTATGTTGACACATATGCTCAATgttaggattgggcatcgagaaacaattcctacttggaatcgtttcaaaaattacgattccagtggcatcgtttctttattggaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205500 lncRNA upstream 103998 4230520 ~ 4235687 (+) True G151673
TU205491 lncRNA upstream 124027 4215393 ~ 4215658 (+) True G151666
TU205490 lncRNA upstream 124382 4215047 ~ 4215303 (+) True G151665
TU205487 lncRNA upstream 125250 4213000 ~ 4214435 (+) True G151662
TU205474 lncRNA upstream 171180 4168190 ~ 4168505 (+) True G151650
TU205545 lncRNA downstream 4945 4347618 ~ 4347821 (+) True G151711
TU205554 lncRNA downstream 22561 4365234 ~ 4367348 (+) True G151719
TU205586 lncRNA downstream 94190 4436863 ~ 4438200 (+) True G151743
TU205590 lncRNA downstream 121795 4464468 ~ 4515450 (+) True G151746
TU205598 lncRNA downstream 155897 4498570 ~ 4501011 (+) True G151752
XM_039824380.1 mRNA upstream 5491 4330072 ~ 4334194 (+) True LOC120574174
XM_039824374.1 mRNA upstream 11277 4324661 ~ 4328408 (+) True LOC120574172
XM_039825800.1 mRNA upstream 147291 4172880 ~ 4192394 (+) True evplb
XM_039825059.1 mRNA upstream 174214 4159601 ~ 4165471 (+) True ddx5
XM_039826266.1 mRNA downstream 57368 4400041 ~ 4403547 (+) False pde6hb
XM_039826276.1 mRNA downstream 64190 4406863 ~ 4413174 (+) True LOC120575467
XM_039824500.1 mRNA downstream 133495 4476168 ~ 4493546 (+) True zgc:65811
XM_039824499.1 mRNA downstream 133495 4476168 ~ 4491379 (+) False zgc:65811
XM_039825794.1 mRNA downstream 176020 4518693 ~ 4526266 (+) True LOC120575146
TU205526 other upstream 20187 4318173 ~ 4319498 (+) True G151695
TU205238 other upstream 676403 3658997 ~ 3663282 (+) True G151471
XR_005642001.1 other upstream 957072 3382514 ~ 3382613 (+) True LOC120575510
XR_005642000.1 other upstream 958299 3381287 ~ 3381386 (+) True LOC120575509
TU205031 other upstream 1191708 3146504 ~ 3147977 (+) True G151315
TU205564 other downstream 57357 4400030 ~ 4403862 (+) True pde6hb
TU205565 other downstream 57357 4400030 ~ 4455745 (+) False pde6hb
TU205566 other downstream 57357 4400030 ~ 4469278 (+) False pde6hb
TU205680 other downstream 420313 4762986 ~ 4765548 (+) False fmc1
XR_005641998.1 other downstream 462087 4804760 ~ 4804913 (+) True LOC120575507

Expression Profile