RNA id: XM_039825059.1


Basic Information

Item Value
RNA id XM_039825059.1
length 2325
RNA type mRNA
GC content 0.49
exon number 13
gene id ddx5
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4159601 ~ 4165471 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCCACATTACCGGCATTTCAGCGCTACTGCAGGTCGTGTTTTTTAGTCGGTGGTAAATCCACAGTGAAGggtatttatcttttttatttatacaaGTTGTTTACAAAATGCCTGGATATTCCGACAGAGACCGcggcagagacagagatagagacagaggATATGGCGGCGGTCCTCCTCGCTTTGGTGGCAACCGTGGTGGTGGCGgcggaggtggaggaggaaagTTCGGCAATCCAGGTGAGAGGCTGCGGAAGAAACAATGGAACCTGGATGAGCTCCCAAAGTTTGAGAAAAACTTCTACCAAGAGCATCCCGATGTTACCCGGAGGTCTCCGCAAGAAGTTGAAATGTACAGAAGAACTAAAACAATTACAGTTAAAGGAAGAAGCTGCCCAAATCCTATTGCCAAGTTCCATGAGGCCAGCTTCCCATCCTATGTGATGGATGTGATCAACAAACAGAACTGGACTGAACCAACACCCATCCAGGCTCAAGGCTGGCCTCTGGCTCTCAGTGGCCAGGATATGGTCGGCATTGCACAGACTGGCTCTGGCAAGACGCTTTCCTATTTGTTGCCTGCAATTGTGCACATCAACCACCAGCCTTTCCTGGAGCGTGGAGATGGTCCTATATGCTTGGTGCTAGCCCCGACACGTGAGCTGGCACAGCAGGTGCAACAGGTGGCTGCAGAATATGGCAGAGCGTCTCGCCTGAAGACCACCTGTATATACGGAGGAGCCCCCAAGGGACCCCAGATCCGTGACCTGGAAAGAGGTGTCGAGATCTGCATCGCCACTCCAGGAAGGCTCATTGACTTCCTTGAGGCTGGAAAGACAAACCTCCGTCGGTGCACCTATCTTGTCCTGGATGAGGCTGACAGAATGCTGGACATGGGCTTTGAGCCACAGATCCGAAAAATTGTTGACCAAATCAGGCCTGACCGTCAGACTCTGATGTGGAGTGCCACTTGGCCCAAAGAGGTTCGCCAGCTGGCTGAAGACTTCCTGAAGGAGTACGTCCAGATCAATATTGGGGCCCTCCAGCTCAGTGCCAACCACAACATCCTGCAAATCGTGGATGTCTGCAACGATGCAGAGAAGGAGAACAAaCTTATCCGTCTGCTTGAAGAAATCATGAGTGAGAAGGAGAATAAGACCATCATCTTTGTAGAGACAAAGAGGCGCTGTGATGATCTCACCAGGAGGATGAGAAGGGATGGGTGGCCAGGTATGGGAATCCATGGAGATAAAAGCCAGCAGGAAAGAGACTGGGTTCTCAATGagTTCAAATATGGAAAGGCTCCGATTCTCATTGCAACGGATGTTGCTTCCAGAGGTCTAGATGTGGAAGATGTGAAATTTGTCATCAACTTTGACTACCCCAACAACTCTGAGGACTATATCCACCGCATTGGCAGAACAGCTCGTAGCCAAAAGACAGGCACAGCTTACACCTTCTTCACTCCCAACAACATGAGGCAGGCCAGTGACCTCATCGCTGTGCTCCGCGAGGCCAACCAGGCTATCAACCCCAAGCTCCTCCAAATGGCGGAAGACAGAGGAGGGCGTTCAAGGGGAGGCAGAGGTGGTGACTACAGAGATGACCGTCGGGATAGGTATTCTGGAAGGCGTGATTTTGGCAGTTTTAGGGACCGGGATAATGGTAGAGGGTTTGACAACGGACCAAGTAAAACGTATGGCACAAATTCACAGAATGGAGGCTATGGGGGCAATAACAGCAGTGGCAATGGCTTGAGCGGAGCCAGCTACAATGGTAATGGACAGTCCAACTTTAACAACCAACCTGGAGCCTTCGGAGGCCAGAACTTCCAGGCCCAACAGTTTGCTCTCGCTAAGGGTGGCGCGCCGAGTGGCGCAGGTCACCCCCCATTCCCTTTCCCCCAGGCACAGGCTCCGCAGCACCATCCTCCACCGCTGGTGCCATACCCCATGCCTCCTCAGTTCTCTCAGTAAACACACCGTACACTTGAAAAAGTAAATTATTGCTTTTGTCTCGTTTTTTAAGTTCTACACTtaatccagatttttttttttttttgtatttacacaACAGGGTTACAAAACAACTTTAACCTCTATCAAGCCTTTTAAGATCTGcagtgcagcagcagtagtTGTGTTGCACACTTGTTTTCCTATTATACTATTTAATTTGTTACATTCCTCagtaatgtttagttatgtTTTGTACTAGGTAATTACAAATGTACTGGTTTTCCATGTGTATCATTGAAAGTGATGTTAAGCTCCGAACTTGGAAGTGCACTGCAtgatctttcaaaataaaacataaaaataaa

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641849.1 lncRNA upstream 204460 3953544 ~ 3955141 (+) True LOC120574263
TU205247 lncRNA upstream 204472 3953555 ~ 3955129 (+) False LOC120574263
TU205252 lncRNA upstream 206169 3952890 ~ 3953432 (+) True G151480
TU205474 lncRNA downstream 2719 4168190 ~ 4168505 (+) True G151650
TU205487 lncRNA downstream 47529 4213000 ~ 4214435 (+) True G151662
TU205490 lncRNA downstream 49576 4215047 ~ 4215303 (+) True G151665
TU205491 lncRNA downstream 49922 4215393 ~ 4215658 (+) True G151666
TU205500 lncRNA downstream 65049 4230520 ~ 4235687 (+) True G151673
XM_039824453.1 mRNA upstream 1264 4083329 ~ 4158337 (+) True smurf2
XM_039824454.1 mRNA upstream 1264 4083329 ~ 4158337 (+) False smurf2
XM_039824452.1 mRNA upstream 77957 4075854 ~ 4081644 (+) True kpna2
XM_039824447.1 mRNA upstream 84634 4036791 ~ 4074967 (+) False LOC120574218
XM_039825800.1 mRNA downstream 7409 4172880 ~ 4192394 (+) True evplb
XM_039824374.1 mRNA downstream 159190 4324661 ~ 4328408 (+) True LOC120574172
XM_039824380.1 mRNA downstream 164601 4330072 ~ 4334194 (+) True LOC120574174
XM_039824376.1 mRNA downstream 172610 4338081 ~ 4342673 (+) False LOC120574173
XM_039824379.1 mRNA downstream 172611 4338082 ~ 4346405 (+) False LOC120574173
TU205238 other upstream 496319 3658997 ~ 3663282 (+) True G151471
XR_005642001.1 other upstream 776988 3382514 ~ 3382613 (+) True LOC120575510
XR_005642000.1 other upstream 778215 3381287 ~ 3381386 (+) True LOC120575509
TU205031 other upstream 1011624 3146504 ~ 3147977 (+) True G151315
TU204936 other upstream 1156237 3001899 ~ 3003364 (+) True G151240
TU205526 other downstream 152702 4318173 ~ 4319498 (+) True G151695
XR_005641832.1 other downstream 172623 4338094 ~ 4346405 (+) False LOC120574173
TU205564 other downstream 234559 4400030 ~ 4403862 (+) True pde6hb
TU205565 other downstream 234559 4400030 ~ 4455745 (+) False pde6hb
TU205566 other downstream 234559 4400030 ~ 4469278 (+) False pde6hb

Expression Profile