RNA id: XM_039824453.1


Basic Information

Item Value
RNA id XM_039824453.1
length 5939
RNA type mRNA
GC content 0.47
exon number 19
gene id smurf2
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4083329 ~ 4158337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACTCACGGTCCGGGCGGAGGCTGCTGCTGCCGAACATGTGAAGATAAAACACCGCGTTACAGTAGCTCGTTTTTACGTCTCACCAGGGAGAAGTCATTtgccattttaattttaattttaattttttcgcATTTGTGAACGATCGCGATGGCAGTTAACTTCACATCCGGGCCACAATGCCTTGACTCCATTACCGTCTAAAACTGGCGGAGAGGTtgataaaccttttttttttttttttttagttaacaGTTAACGACACATTTTGATTACGTGCAGTGAAGGCTGGAACCAAGAGGACATGTCTAACCAAGGAGTCCGGCGGAATGGCCCTGTGAAGCTGCGATTAACAGtccTCTGCGCCAAAAACCTGGTGAAGAAGGACTTCTTCCGCCTCCCTGATCCCTTTGCCAAGGTTGTTGTGGACGGTTCAGGGCAATGCCACTCTACAGACACTGTGAGGAACACACTTGACCCCAAGTGGAATCAACACTATGACCTATACATCGGGAAATCCGATTCTATCACCATCAGCGTGTGGAATCACAAGAAGATTCACAAGAAGCAAGGGGCTGGGTTCCTTGGCTGTGTCCGCCTTCTGTCCAACGCTATCAACCGCCTTAAAGACACAGGCTGTAAGTACCAGAGACTAGACTTGAACAAGTTGAGTCCCAATGACAGTGACACAGTCAGAGGCCAGATAGTGGTGAGCCTGCAGTCTAGGGACCGGATAGGCTCAGGAGGCCCTGTGGTGGACTGCAGTCGGCTGTTTGACAATGATCTCCCAGATGGCTGGGAGGAGCGGAGGACGGCGTCTGGACGGATCCAGTACTTGAACCACATCACACGCACCACGCAGTGGGAGAGGCCTACCAGGCCTGCATCGGAGTACTCCAGCCCgggccggcctctcagctgcaTCGTGGATGAGAACACGCCCGTCAGCACCAACGGGGCCACGCCTACCACCGTATTGCCGCCCGTCGACGGCGACCAGCGGGCCCAGGAGAGACGGGTCCGCTCCCAAAGGCACCGCAACTACATGAGCAGAACCCACCTGCACACACCCCCGGACCTCCCTGAGGGATATGAGCAGAGGACCACGCAGCAAGGCCAAGTGTACTTCCTCCACACTCAGACCGGTGTCAGCACGTGGCACGACCCCAGAGTACCAAGAGATCTTAGTAACGTGAACTGTGAGGAACTGGGTCCACTGCCTCCAGGATGGGAGATACGGAACACTGCCACCGGGAGGGTTTACTTTGTCGACCACAACAACCGAACCACGCAGTTTACAGACCCGCGCCTCTCCGCCAACCTGCACCTAGTCCTGAATCCAAGTCCAAGCCCAAGCCCCAACGGTTCTCGAGGAGGCATCGAAAGTCAGAATGTCAGTCGCCAGAACCAGTTGAAGGATCAGGCCCAGCAGGCTCTGGTGTCCCCTGCTCAGCTCCCGGAGGAGGCCGAGTGCCTCACGGTGCCCAAGTACAAGAGGGACCTTGTCCAGAAGCTCAAGATCCTCCGCCAGGAACTGTCCCAGCAGCAGCCTCAGGCCGGCCACTGCCGCATCGAGGTATCCCGCGAGGAGATCTTCGAGGAGTCGTATCGCCAGGTGATGAAGATGAGGCCGAAGGACCTGTGGAAAAGGCTAATGGTGAAgttcagaggagaggaagggctCGATTATGGAGGCGTGGCCAGGGAGTGGCTCTATCTGCTGTCGCACGAGATGCTGAACCCGTACTACGGCCTGTTCCAGTACTCCCGGGATGACATCTACACACTGCAGATCAACCCAGACTCTGCCGTCAACCCTGAGCACTTGTCTTACTTTCACTTTGTGGGCCGTATCATGGGGATGGCAGTGTTCCACGGCCACTACATAGACGGAGGCTTCACCCTGCCCTTCTACAAACAGCTGCTGGGTAAACCCATCACTCTGGACGACATGGAGTCCGTTGACCCGGACCTGCACAACAGCCTCGTGTGGATCCTgGACAACGACATCACAGGTGTGCTGGACCACACCTTCTGCGTGGAACACAATGCTTATGGAGAGATCATCCAGCATGAGCTCAAGCCCAACGGTAAGAGCATCCCCGTCACCCAGGACACCAAGAAGGAGTACGTGCGGCTCTACGTCAACTGGCGTTTCCTGCGAGGCATAGAGGCCCAGTTCCTGGCTCTGCAGAAGGGCTTCAATGAGGTCATCCCCCAACACCTGCTGAAGGCCTTCGATGAGAAGGAGCTCGAGCTGATTGTATGTGGCCTGGGTAAAATTGACATCAACGACTGGAAGTCCAACACGCGGCTCAAACACTGCACTCCAGAGAGCAACATCGTCAAATGGTTCTGGAAAGCTGTGGAGTCCTTCGATGAGGAGCGCAGAGCCCGGCTGCTGCAGTTTGTCACCGGCTCCTCCAGAGTTCCCCTGCAAGGATTCAAGGCCCTCCAAGgtgcTGCTGGCCCGCGGCTCTTTACCATCCACCAGATTGATGCCAGCACCAACAACCTGCCCAAAGCCCACACCTGTTTCAACCGGATTGACATTCCTCCCTACGAGCACTATGACAAACTGTACGACAAGTTGCTCACCGCCATCGAGGAGACGTGCGGCTTTGCTGTGGAGTGACTCACTGATTCAGGCAGAGCTCCGCAACAACCAGAAGCAACACGGTTTGGCCATAATgagcccccacccccaccccacccccaccctgcccacacacacacacacacacacacaaatcaatcCACTCAACACGGGGGTCATCCACGGCTGCTTCGCCCAGGGCCGCCTATACTTCCCGGGGACATGTGGCCAAGCTAATGGAGGCTGGACAAAGAAGATCAAGAAAATGTCATCTGACTCTGGGTATTTTTTTAAGACCCTCCAGCCTtcctttgtgtcttttttttttttatcattgaaAAGGATCTCTTCAGCTGCTAATAACTCAGACTATTTACTAACTCGTGGAACCTGCAAAAAGTTGCTGGCTCTTCCCTTTTTTTCTAAGTTCAttttagcattaaaaaaaaagaaaagaaaaaaagactgtaTTCAATGTAGCAATGCTCCATCTTACCAAGCAGAACACAAGGTCAGTCCACTCTGAAAACGACATTAACGAGACCGGTTTGTTTGCTAGAGCACAGGGTTATTAATGGTTCCCACAACCACTTGGAAACACTAAATTTGTATGCAGAGTGTGCATGACTCGTGCTGTTTGGTGCCTCAGAGCGATCACATCGGGGCTATCAGTACTACCGAGGCTGGAAAACAGGGATGCGTGCGGATGAGAGGGCAAGACTAGAGACTGAATTAGGCAGACACCCGACTGTTTACAACCCTCTCCAAAGACCAGCAGCGGGGACTTCTGCTCCGGAGTCACCGGCCAACAAGTAGCGCTGCATTCCCAAAACATATTTCACACGTTTGACAGCTCGTTTTCTTTGAAGACGAATAAGTGAATGAAAAGCttgaaatgtgttatttttatataacagggaaaatttgaaaaagaaacaataaaattctatataatatatataatttattgcTGATCTCTTTCAGAAACCCCTATCCATCGtttcagaaaaataaaagctCTCTAAATGTTAAGTGTTTAAATTATAGAAGATCATTTGTGAAAACCGAATTAAGCTTGAGTGAATTTCACTCAAGAACGCTGGGGTCTATTTCTTGACATAACCTCTCTCACACTGTCCAAGGAGAGGTATGTCCTACAGAGCAACGCAAATCTAAAACACGCAATGTCCTCGGAGTGCCATAATCATTTCTCAATGAATGAATCTTTGCTAACCTTGAGTAGACACGGGCcggttaccggtttcaaggtataccaCTACAATTTTCacagaaagtgcagttttgAAATCCACCTCCCTGCCGGTTTtcagtgtgtttttaaaaataaaatacattgtgttcaatggagggaaaaaaaaaagttacatttcaaaataatacattttaaagctgtaattgcaataccgtgaaacggtgatatttttgctgaaggttaccGTACCGTCAGAATCTCATACCAGCCCGTGCCTAGTCTTGAGCAGACCCTTTAAAATCTACTGATTTCATTCTGGCGCTACACATGGGCGTGTGATGTTTCTCTCCTGTtacccttttatttatttttttaacacttcCGTCATTTGTAGCTGGGCATGGCACTGGCATGACACCTACCATTAATTCCAAATGGTATTCTGTTCAGAAGAGTCCAATGTTCATCATCTTGTAattcattgttattgttgtgggggggggggaagaaaacCTCTACTACCTGCTAGCCATGTGGTGCTATATAGCATTAACGTTTGTCTTTGTATTGGCGACATTAAGGCTGTTTTATACTTCTGCAAACACCTCTTCTTTTGTGTCGCTGCAACGCAGACCGcgaggactgtgattggtcgactggtcctgtgtgttgacagtgggtgtttcaagcagcctactgtgtggagtagcaacatgctagttcactgacatcagctttgcaaattatctcagacatattttggttataATGACAGGGTTATCCGTTTGCAAAGTGTCTACATGTCAGCAACGTTTGgaaattagcacttcgccagcaagcagcactttgtgggcagttgtgctaacGTTTGCTcgctaacataacataaactggctctctctctttcgtcggaaatggcagagttttgcGATTGACCCTCCGGAAACaaccacccccctcccccctttccccAGCAtggagttgacgcagaagcataaaacagcctttactCATTGATATACTACTGCTCGAGGTGCACGCTACACTACTCATGCTCATACCTGTTTGTGGCCACAAAATCTTTCCAAGTAATCAAGAGCTCTAGCTAGCCACATTCTCAGGAGATGTCATATGTAGTTTGTAACTTCCTTTTGATTTTTACGAACGAAGAGAAACTAATTCTGACAGTTTGTCTTGATTTCCTGAATATTtaagggataaaaaaaataaaataaagtcttGTCTGAATCGTTTTGCCCGCAGCAGACCGTTGACATACAACAATCGTTGCATGTGTCCGTATGTGCTTTTGATTTGAAAAGGAACTGAATGAGATGAATCCTGTTTTAGCCTGATACACAGTCCTATcagtgatgtttttttatttagagaaagagggtgggggggggggattgttTTCTACGATTAAAAGTGAAATCCTTGAATGTTTTCAAAAGATGCTGCCTGTCTAGTAATCTCTATGACCGTGGACTGTTCTTAACATCTGCAtacactacaaaaaaaaacaaaaatgaactgAATTTTCATTCTTTTACATGGACAAGTGTATGCAAGGTGAAGTGTCCTCAGATGGTGCTTTGTACAGTAAAAAGATATTGTTCATATATGTGGATCAAACGACCTGTAATTTATCTTTAACTTAAGTAGAGAAATGAAAAGAGGAATTGCACACAAACAGAATGAGGTCGCCTTGTGTATTTAATTGGTGACTTCTCGATCAGATATTCATTCGCCTTTTAAGTCCAGTGCACAAGCTGATGGCCCTACTGTCTGCTCCTACGCTACACCGCTCAGCATCACCCTGTACCTGCCTCTCGTTGAAGAACTTTTTATTAAACGAGTCAAAGTTGAGACGCcgcttttttttgtctttttattttattttttttaatagcatGATCCACTAGCAGGACTATATCTCTCATAGCTGACTGATGCAATTTGATGTACGTTAACACTATCATTTTGTAagagtattttatttttgtgtgtaattaGTTCTAATTAAACTTGCCTTTGTCTAACAATGTAAGGCCTTGTACACATATATGTCCTGTCCTTCCTGTTTGAATGGTTGTttcaaatgtcataaaaagctttttcacctgAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641849.1 lncRNA upstream 128188 3953544 ~ 3955141 (+) True LOC120574263
TU205247 lncRNA upstream 128200 3953555 ~ 3955129 (+) False LOC120574263
TU205252 lncRNA upstream 129897 3952890 ~ 3953432 (+) True G151480
TU205474 lncRNA downstream 9853 4168190 ~ 4168505 (+) True G151650
TU205487 lncRNA downstream 54663 4213000 ~ 4214435 (+) True G151662
TU205490 lncRNA downstream 56710 4215047 ~ 4215303 (+) True G151665
TU205491 lncRNA downstream 57056 4215393 ~ 4215658 (+) True G151666
TU205500 lncRNA downstream 72183 4230520 ~ 4235687 (+) True G151673
XM_039824452.1 mRNA upstream 1685 4075854 ~ 4081644 (+) True kpna2
XM_039824449.1 mRNA upstream 8362 4036791 ~ 4074967 (+) True LOC120574218
XM_039825059.1 mRNA downstream 1264 4159601 ~ 4165471 (+) True ddx5
XM_039825060.1 mRNA downstream 1264 4159601 ~ 4164884 (+) False ddx5
XM_039825800.1 mRNA downstream 14543 4172880 ~ 4192394 (+) True evplb
XM_039824374.1 mRNA downstream 166324 4324661 ~ 4328408 (+) True LOC120574172
XM_039824380.1 mRNA downstream 171735 4330072 ~ 4334194 (+) True LOC120574174
TU205238 other upstream 420047 3658997 ~ 3663282 (+) True G151471
XR_005642001.1 other upstream 700716 3382514 ~ 3382613 (+) True LOC120575510
XR_005642000.1 other upstream 701943 3381287 ~ 3381386 (+) True LOC120575509
TU205031 other upstream 935352 3146504 ~ 3147977 (+) True G151315
TU204936 other upstream 1079965 3001899 ~ 3003364 (+) True G151240
TU205526 other downstream 159836 4318173 ~ 4319498 (+) True G151695
XR_005641832.1 other downstream 179757 4338094 ~ 4346405 (+) False LOC120574173
TU205564 other downstream 241693 4400030 ~ 4403862 (+) True pde6hb
TU205565 other downstream 241693 4400030 ~ 4455745 (+) False pde6hb
TU205566 other downstream 241693 4400030 ~ 4469278 (+) False pde6hb

Expression Profile