RNA id: XM_039824405.1


Basic Information

Item Value
RNA id XM_039824405.1
length 1598
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC120574186
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 29171995 ~ 29198622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggataatcagttgagatcgtgtgtgtgcgtccttgagaactAGTGCTGAGATTACCAGAACACTACAGAGggctgctgttgtgtgtgtgatcatcCTGCCGATGTTATATTTGGTGATAGTCTATTACCGTCCCGGAGAGCTAAGACAAGAGGTTCCTACCACACAAAAGAGCCGCCCCCTCCCCCACAATTCCAGCTTGTCACTCCAGAGTCATCTTCCCCCACCTGGTCCATGCACCTGTCCAGGCGGCTCAGTGCTGCTCAAAGATCACATCCCCAAGGATCAGTATGAGAAGGTGGCCAAACGCCGAGCTAAGGAGCTCCAACAACACAAAGCCAGgACTACATCTGTATTATCGAAACTGCTGATTGCTTTGCCAAACTCTCCTCTGCAGTATCCTATCCAGGGTTTTACAGTACGACCCTTGACCACCACTCCCATACCAGGTTTAGCACTGCATGCGGAACAAAGAAGCAGCTACAAGGTGTCCTTGAATGTGTCCAAAGGGGTCCTGACTACGGAGAATCTAGCTGAAGGTGTGAAGGTCCAAGgtGGTGGTGGGACCAGACTGATTATGGAATCTAGCAGCCTGGTGATCCTCAACGATGCACTGACTAAAGTGATCTACACCAGTACTGTCTACCATATACACACTGGAGACCTCGCATCCTTCCAGTTTGAAAACCATGAAGCTGTGTTTCCCATTACCATCAAACAGCCTCAGCTGCCAGTGCTGCACGACATGGGGACAGATATCAACTCTCACGTCACCATCGCCACAAAGACATTTCTGCGCTACCCACAACTCAAGGTGTTGTTGAGTAGCATCCGGCGTTTCTATAGCAACATAGAAGTCGTCATTGCAGATGACAGCTTTGAACCAGAGCACATTACCGGAGAGCACATCCGGCAGTACTTCATGCCTCCAGCACAggGCTGGTTTGCTGGCAGGAATCTGGCCGTCTCCCAGGTAACCACCAAGTACTTCCTGTGGGTGGACGATGACTTTTTGTTCACGGAGAACACAAAGATAGAGAAGCTGGTGGAGGTGATGGAGGCGGTCCCAGAACTGGACTTGCTAGGTGGGACAGTACAAGGGAACcagttttatttctctcttctctatgaggaaggagaggaaatgGAAGGTGGCTGCCTGTACAGGAAGTCTCAACGGAAGTTCCAATCACTTCCTGGTTACCCACAATGCTTTCTGGCCAATGGGGTGGTCAACTTCTTCCTGGCTCGCACAGATGCCATCCAGAGGGTGGGATTTGACCCTAAGCTCCAAAGGGTAGCACACTCAGAGTTCTTTATGGATGGCCTGGGCTCGTTGCTGGTCGCCACGTGTGACCATGTGTCCATTGACCATCAGCCCAAAACAGGCAAAGGCAAGGACAATGCTCACTACGCTCGTTTTAGAAACCCTGGAAAGAGTGACATGGAGTTCAAACTGCAGCTTCACTTTTTCAAAAACCACCTAAAGTGTATCAAATATGGATAGACGACTACAAGAGGACATTGTGTTACATATTTCCCTGCAGTTATTCAAATAAATAGTTCTGATTCTGGGTGGCAAAACCAGGTCTGAAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215515 lncRNA upstream 51012 29120778 ~ 29120988 (+) True G158987
TU215498 lncRNA upstream 68332 29103270 ~ 29103668 (+) True G158975
TU215437 lncRNA upstream 183328 28988164 ~ 28988672 (+) True G158923
TU215439 lncRNA upstream 190136 28981409 ~ 28981864 (+) True G158925
TU215436 lncRNA upstream 196990 28974779 ~ 28975010 (+) True G158922
TU215599 lncRNA downstream 175245 29373867 ~ 29382617 (+) True LOC120575282
TU215603 lncRNA downstream 192587 29391209 ~ 29391965 (+) True G159060
TU215607 lncRNA downstream 200088 29398710 ~ 29398910 (+) True G159064
TU215614 lncRNA downstream 215717 29414339 ~ 29418732 (+) True G159070
TU215606 lncRNA downstream 232620 29431242 ~ 29433842 (+) True G159063
XM_039824409.1 mRNA upstream 15622 29123210 ~ 29156378 (+) False LOC120574188
XM_039824407.1 mRNA upstream 15622 29123212 ~ 29156378 (+) True LOC120574188
XM_039824408.1 mRNA upstream 15622 29123212 ~ 29156378 (+) False LOC120574188
XM_039825913.1 mRNA upstream 52984 29104664 ~ 29119016 (+) True nags
XM_039825461.1 mRNA upstream 186374 28975950 ~ 28985626 (+) True LOC120574945
XM_039824411.1 mRNA downstream 1958 29200580 ~ 29207687 (+) True LOC120574189
XM_039824412.1 mRNA downstream 13843 29212465 ~ 29215793 (+) True LOC120574190
XM_039824507.1 mRNA downstream 100790 29299412 ~ 29326460 (+) True col1a1a
XM_039826003.1 mRNA downstream 167221 29365843 ~ 29381744 (+) False LOC120575282
XM_039825027.1 mRNA downstream 220346 29418968 ~ 29425336 (+) True pex12
TU215267 other upstream 404412 28739857 ~ 28767588 (+) False rras
TU215266 other upstream 404412 28754334 ~ 28767588 (+) False rras
TU215205 other upstream 639370 28526835 ~ 28532630 (+) True G158767
TU214990 other upstream 1119551 28048512 ~ 28052449 (+) True G158612
TU214866 other upstream 1510377 27656897 ~ 27661623 (+) False smg1
TU215520 other downstream 1986 29200608 ~ 29207686 (+) False LOC120574189
TU215521 other downstream 1986 29200608 ~ 29207686 (+) False LOC120574189
TU215523 other downstream 1986 29200608 ~ 29207686 (+) False LOC120574189
TU215524 other downstream 1986 29200608 ~ 29207686 (+) False LOC120574189
TU215617 other downstream 270303 29468925 ~ 29471599 (+) True G159073

Expression Profile