RNA id: XM_039824726.1


Basic Information

Item Value
RNA id XM_039824726.1
length 1568
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC120574453
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10808307 ~ 10811425 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATGTACATCAATGTAGATACATCAAACAGGCATCTACTACTACTGGATACTCTTAGGTATACTAACCATGTCTTTGCAATTTAGGAATATCACCTCATGATTAAATTAATGCTTTAAAAGCTGAGGTTTACTTCTATAGTCCCATTATTATACTTAATACGGTATAAAAAGCTTAATTCCTCAATTTCAGTGGAATCACTTGAGGTAAACCATCACCACTTTTTCCACAGGCAGCTGAGCTGTGATGGCAATGGCATGGATAAGATCGCTGGTCATATCAACCCCTCCCCCACCTTCTCCTACTTTGCCTGAACAATGGAGGGACATACAATGGGGAAAAGACTACAAAGAAAAAGACCTACAGTTTGTGAAGGATTATCATCTTAACGATGATGAACAGCTCAGAGTTCTGCTTTATGGACCCACTGGTTCTGGCAAGTCCAGCTTCTTCAACTCTGTCGACAGTGCTTTACAAGGCAGAATCACTGGTCGAGCTTTGCCAGATGCAATCTATGAGGAGAGCTTCACCACAAAATACAGAACTTTTAAAATCCAAAACAGAGGACCAGGAACATTTTACCCCTTTGTCTTCACTGACATCATGGGCATTGCGCAAGGAACCAATAAAGGAGTTGGTGTGGAAGACATCAAACAAGCAATGATGGGACACATTAGAGATGGTTACAATTTCAATCCTGTCTGTAAAATATCGGTGGATGATAACAACTACAACAAAACCCCCACTCTAAATGACCGAGTTCATGTTGTGGTTTGTGTAATCGCTGCCGACACAGTAAATATACTGAGTGCTGAATCTGTGAGAAAGATGAGGGAAGTCAGACTTGCAGCTAGAGACATGGGGATTCCCCAACTGGCTATTCTCACCAAAATTGATGAAGCCTGCCCAGAGGTCAAAAGAGATATAAAGAATGTCTATAAGAGCAAGTACCTGAAGCAACAGATGGAAAATGTAAGCGTGGGGCTGGGTATTCCAGTGTACTGCATTTTTCCTGTGAAGAACTACCACTCAGAGATCGCCACAGATGATGACACTGACACACTGATACTGAGTGCACTGAGACAGATGATCAACTTCGGAAAAGACTTTCTGGAAAGCATGTAGACCTACATTATGCTGAAGCAAATCTTGCTTTAGCAGCGTGAAAAGAACCAGTCTGCAAACAGGAATGACCTAAAGTGGGCTTCTGGTTTTTCATTTGCATGCACGTAATGCGTATCTGCTATAAGTTGTCTTACACCTACCTTGCTGAATAAAGTATGAACAGGCTGCATGTGTATCAGCCTGATGCAATTAAAACCTACTCTCATGTATTTTGAGTTTTTGTATCTTTATATATCTATTGATTCAGTTGGTAATTTTGGGTGTTAGTTAATCATGAATCTGGTGATTAGCAGgtctgaacacatcttcatgTCTCAGTTGAAACTGAAATAAATTTGGTGGAACAGTGATTTCTTTTCAAACGACTTGTTACATATCTACAGTTCAAAAAGCATTTTCTATTTCAATGTTTGGACCTTATATATACTGAAACGTTGTGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208277 lncRNA downstream 213300 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 514141 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 638868 10163444 ~ 10169439 (-) True G153663
TU208150 lncRNA downstream 769522 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 780608 10025317 ~ 10027699 (-) True G153630
TU208577 lncRNA upstream 93930 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 139146 10950571 ~ 10959521 (-) True G153950
TU208584 lncRNA upstream 221781 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 257618 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 460394 11271819 ~ 11272848 (-) True G154036
XM_039824730.1 mRNA downstream 16742 10784271 ~ 10791565 (-) False LOC120574455
XM_039824397.1 mRNA downstream 36054 10738908 ~ 10772253 (-) False spag9a
XM_039824728.1 mRNA upstream 1428 10812853 ~ 10820285 (-) True LOC120574454
XM_039824607.1 mRNA upstream 120373 10931798 ~ 10941167 (-) True dhps
XM_039825783.1 mRNA upstream 131387 10942812 ~ 10947670 (-) True fbxw9
XM_039825578.1 mRNA upstream 142745 10954170 ~ 10969756 (-) True LOC120575016
XM_039825580.1 mRNA upstream 142745 10954170 ~ 10966860 (-) False LOC120575016
TU208443 other downstream 16768 10784112 ~ 10791539 (-) True LOC120574455
TU208212 other downstream 418131 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 418187 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other downstream 418187 10360812 ~ 10390120 (-) False gtpbp1
unassigned_transcript_828 other downstream 985314 9822145 ~ 9822993 (-) True LOC120574648
XR_005642003.1 other upstream 156681 10968106 ~ 10968174 (-) True LOC120575512
XR_005641868.1 other upstream 267162 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 267162 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 267251 11078676 ~ 11080606 (-) False LOC120574486
TU208632 other upstream 299543 11110968 ~ 11137482 (-) False tnrc6c1

Expression Profile